Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_P12
         (430 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch...    29   0.31 
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur...    27   1.6  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    26   2.9  
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom...    25   3.8  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   3.8  
SPAC1F12.05 |||conserved fungal protein|Schizosaccharomyces pomb...    25   5.0  
SPAC25G10.02 |cce1|ydc2|mitochondrial cruciform cutting endonucl...    25   6.6  
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c...    24   8.7  

>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 219

 Score = 29.1 bits (62), Expect = 0.31
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -3

Query: 245 FKPLHDWLKAENQRTGEYIGWEPSKIQYCTEEQIDALNAREPTTESQ 105
           FK    +LKA  ++ G+YIG  P K+   T + +      E T +S+
Sbjct: 77  FKDSDQFLKAWREKNGKYIGSRPVKLSRATSD-VKPNEVNEKTIDSK 122


>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
           deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 398

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 19/64 (29%), Positives = 27/64 (42%)
 Frame = +1

Query: 193 YSPVLWFSALSQSCSGLKYSSRPSAFIFRCPVKASIASGQGFDEPIFSMFASAFPAATLS 372
           Y+PV   S L+Q    L  ++ P       P   S  SG+   E   S  A  FPA  + 
Sbjct: 260 YNPV---SRLTQPLPSLASTASPQQV--SPPAAPSTTSGEAIPENFVSYGAQVFPATQMP 314

Query: 373 YISQ 384
           ++ Q
Sbjct: 315 FLQQ 318


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
           Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = +1

Query: 241 LKYSSRPSAFIFRCPVKASIASGQGFDEPIFSMFASAFPAATLSYIS 381
           ++  S   A IF+C    SIA GQ F    + +F   F A+ LS  S
Sbjct: 347 IRNKSASDAAIFQCISLLSIALGQAFSNYAYDLFDLIF-ASGLSEAS 392


>SPBC713.04c |||U3 snoRNP-associated protein
           Utp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 854

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 11/48 (22%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = -3

Query: 230 DWLKAENQRTGEYIGWEPSKIQYCTEEQ--IDALNAREPTTESQEPVS 93
           DW+   + + G+ + WE     Y  ++Q   DAL+  + +++ Q  ++
Sbjct: 309 DWIAIGSSKLGQLLVWEWQSESYVLKQQSHYDALSTLQYSSDGQRIIT 356


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 38/122 (31%), Positives = 53/122 (43%), Gaps = 2/122 (1%)
 Frame = +1

Query: 70  STLR*SHELTGSCDSVV--GSLAFRASICSSVQYCILLGSHPMYSPVLWFSALSQSCSGL 243
           STL  S E+     S +  GS A  ++  S+    I+  S PM S VL  S+   + S  
Sbjct: 495 STLSTSSEVVSEVSSTLLSGSSAIPSTSSSTPSSSII--SSPMTS-VLSSSSSIPTSSSS 551

Query: 244 KYSSRPSAFIFRCPVKASIASGQGFDEPIFSMFASAFPAATLSYISQSTSFLVRSPGTYS 423
            +SS  +  I      +SI S       I S   S+  + +LS  S STS    S  T S
Sbjct: 552 DFSSSITT-ISSGISSSSIPSTFSSVSSILSSSTSSPSSTSLSISSSSTSSTFSSASTSS 610

Query: 424 PA 429
           P+
Sbjct: 611 PS 612


>SPAC1F12.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 377

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -3

Query: 224 LKAENQRTGEYIGWEPSKIQYCTEEQIDA-LNAREPTTESQEP 99
           +K EN +    +GW  +KI +  EEQI A +N     T +++P
Sbjct: 199 VKPENSK----VGWRLTKISWRIEEQIKAQINGCSTHTGTKKP 237


>SPAC25G10.02 |cce1|ydc2|mitochondrial cruciform cutting
           endonuclease Cce1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 258

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 15/41 (36%), Positives = 18/41 (43%)
 Frame = +1

Query: 136 RASICSSVQYCILLGSHPMYSPVLWFSALSQSCSGLKYSSR 258
           R SI   +QY  LL   P  +   W S L+   S  K  SR
Sbjct: 151 RNSIEQKIQYPFLLSLSPKSTYSYWASVLNTKASFSKKKSR 191


>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 502

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
 Frame = -3

Query: 410 GDLTKKLVDCDIYESVAAGNALANMLKMGSSKPW-PDAMEALTG 282
           GD T +L DCD    +A      N +   S   W PDA    TG
Sbjct: 155 GDFTARLWDCDTQTPIATMKGHTNWV---SCVAWAPDASIIATG 195


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,606,862
Number of Sequences: 5004
Number of extensions: 29027
Number of successful extensions: 106
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)