Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_P12
(430 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1313 - 29252335-29252446,29253430-29253671,29253770-292538... 36 0.010
02_05_0583 + 30128795-30129158,30129342-30129505,30129602-301296... 29 1.2
12_01_0978 + 9908001-9908175,9908538-9908619,9910793-9910904,991... 27 4.9
12_01_0339 + 2603351-2603891,2604048-2604226 27 4.9
09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,353... 27 4.9
02_04_0203 - 20888010-20888162,20888242-20888469,20888969-208890... 27 4.9
02_01_0575 - 4264136-4264200,4264589-4264652,4264760-4264879,426... 27 4.9
08_02_1453 - 27199228-27200579,27200712-27202646,27202905-272029... 27 8.5
02_01_0015 - 98311-98412,98635-98707,98830-98921,99139-99230,993... 27 8.5
>06_03_1313 - 29252335-29252446,29253430-29253671,29253770-29253848,
29254991-29255130,29255262-29255571,29255810-29255952,
29256106-29256306,29256453-29256581,29256921-29257199,
29258036-29259720,29261255-29261764,29261901-29262108,
29264347-29264458,29264594-29264763
Length = 1439
Score = 36.3 bits (80), Expect = 0.010
Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 4/109 (3%)
Frame = -3
Query: 416 VPGDLTKKLVDCDIY-ESVAAGNALANMLKMGSSKPWPDAMEALTGQRKMKADGLLEYFK 240
+PG L K + C + E+V A ++ + D + TG+ K+K L+E F
Sbjct: 821 IPGALNK--IHCHVQQETVVADKESVTVVDVKKKTGSVDVTISKTGKPKVKGVSLMELFT 878
Query: 239 P--LHDWLKAENQRTGEYIGWEPSKIQYCTEEQIDAL-NAREPTTESQE 102
P +H+ + + Q G+++ + + C + QI AL NAR E E
Sbjct: 879 PEQIHEHINSLRQWIGQWVQCDKCE---CWQHQICALFNARRNDVEEAE 924
>02_05_0583 +
30128795-30129158,30129342-30129505,30129602-30129665,
30130082-30130215,30130369-30130452,30130580-30130654,
30130734-30130805,30130892-30130965,30131217-30131269,
30131388-30131497,30131824-30131892,30131975-30132049,
30132449-30132508,30132555-30132647,30132718-30132797,
30132877-30132976,30133153-30133590
Length = 702
Score = 29.5 bits (63), Expect = 1.2
Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Frame = -3
Query: 287 TGQRKMKADGLLEYFKPLHDWLKAENQRTGEYI-GWEPSKIQYCTEEQIDALNAREPTTE 111
T + DG+ + + H+ LK N + G+ G E +KI+ +Q + N EPT+E
Sbjct: 605 TNEETSILDGVTKDKRQTHETLK--NHKKGKKRNGPESTKIK---GDQKETHNEEEPTSE 659
Query: 110 SQEPVSS*L*RNVLK 66
++PVS+ + ++V K
Sbjct: 660 KKQPVSAKIKKSVPK 674
>12_01_0978 +
9908001-9908175,9908538-9908619,9910793-9910904,
9911965-9913737
Length = 713
Score = 27.5 bits (58), Expect = 4.9
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = -3
Query: 254 LEYFKPLHDWLKAENQRTGEYIGWEPSKIQYCTEEQIDALNAREPTTESQE 102
LE K HD LK ++ T +G K+Q C E A+ A T + +
Sbjct: 405 LEAVKEEHDQLKQKDTETESIVGDLHVKLQKCKSELEAAVAAESKATSASD 455
>12_01_0339 + 2603351-2603891,2604048-2604226
Length = 239
Score = 27.5 bits (58), Expect = 4.9
Identities = 16/57 (28%), Positives = 28/57 (49%)
Frame = -3
Query: 389 VDCDIYESVAAGNALANMLKMGSSKPWPDAMEALTGQRKMKADGLLEYFKPLHDWLK 219
V C +A A ++ +G ++ W DA + +RK+K + + + K L DW K
Sbjct: 176 VHCAFGHGRSACVVCAVLVALGIAENWKDAENIIREKRKIKMNAV--HRKTLDDWSK 230
>09_02_0048 -
3532663-3533475,3534086-3534589,3534715-3535740,
3536083-3536226,3536974-3537375,3537499-3537721,
3537830-3542368,3542480-3542599,3543005-3543038,
3543922-3544102,3544198-3544815,3545022-3551098,
3551139-3551304,3551508-3551614,3552056-3552178,
3553417-3553642
Length = 5100
Score = 27.5 bits (58), Expect = 4.9
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 139 ASICSSVQYCILLGSHPMYSPVLWFSALSQSC 234
+ IC +VQ CIL ++SP W S +C
Sbjct: 393 SDICCTVQVCILASLLEIFSPEKWKYDRSAAC 424
>02_04_0203 -
20888010-20888162,20888242-20888469,20888969-20889073,
20889148-20889225,20889308-20889382,20890037-20890123,
20890216-20890283,20890396-20890483,20890583-20890683,
20890793-20890913,20891008-20891169,20891271-20891441
Length = 478
Score = 27.5 bits (58), Expect = 4.9
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = +1
Query: 211 FSALSQSCSGLKYSSRPSAFIFRCPVKASIASGQGFDEPIFSMFASAFPAATLSYISQS 387
F S S GL+ SRPS F + S +G G + M A+A A+ + + +
Sbjct: 36 FPCCSTSAGGLRLRSRPSRFPQKAATTRSGRAGAGARAVVRCMAAAAVAASDAAQLKSA 94
>02_01_0575 -
4264136-4264200,4264589-4264652,4264760-4264879,
4264906-4265002,4265365-4265437,4265534-4265630,
4265736-4266007,4266114-4266240,4266902-4267139,
4267508-4267620,4267722-4267762,4268569-4268788
Length = 508
Score = 27.5 bits (58), Expect = 4.9
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -3
Query: 200 GEYIGWEPSKIQYCTEEQIDALNAREPTTESQEPVSS 90
GE GWE +++ E Q NA++ + PVSS
Sbjct: 454 GEETGWEAKEVKKVLEGQQKMKNAQDQNCKRLTPVSS 490
>08_02_1453 - 27199228-27200579,27200712-27202646,27202905-27202966,
27203525-27203545,27204305-27204344,27204345-27204792,
27204866-27204964,27205071-27205394,27205446-27205574,
27205657-27205875,27205976-27206194,27206436-27206669,
27206773-27206943,27207466-27207577,27207955-27208010,
27208083-27208181,27208901-27209134,27209258-27209311,
27209363-27209422
Length = 1955
Score = 26.6 bits (56), Expect = 8.5
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -3
Query: 338 MLKMGSSKPWPDAMEALTGQRKMKADG 258
++K S K PD M+ LT RK+ DG
Sbjct: 1926 VIKCESLKLLPDGMDGLTSLRKLHLDG 1952
>02_01_0015 -
98311-98412,98635-98707,98830-98921,99139-99230,
99363-99432,99683-99781,100008-100093,100541-100655,
100853-100918,101064-101143,101226-101301,101915-102151,
102559-102590,102993-103047,103384-103498,104497-104579,
105182-105232,105740-105802,105945-106010,106144-106279,
106503-106591,106844-106964,107138-107340,107434-107820
Length = 862
Score = 26.6 bits (56), Expect = 8.5
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Frame = +2
Query: 284 PLRLPSHQAKAS--TSPSSACLLVHSP 358
PL LP + KA T+P CL+ +SP
Sbjct: 67 PLPLPERKGKAKSPTNPKQVCLVANSP 93
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,811,422
Number of Sequences: 37544
Number of extensions: 210999
Number of successful extensions: 720
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 802495716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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