Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_P11
         (455 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.10c |thi4||thiamine-phosphate dipyrophosphorylase/hydro...    25   5.5  
SPAC1687.17c |||Der1-like |Schizosaccharomyces pombe|chr 1|||Manual    25   7.3  

>SPAC23H4.10c |thi4||thiamine-phosphate
           dipyrophosphorylase/hydroxyethylthiazole kinase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 518

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = +2

Query: 218 YGPYILSLSYMLK--LTVIR*IVSGYYRSVTLLLSY*RCGALKCHI*RL*QISDVCGRY 388
           Y  Y+++ S ++    T+ R +  G    VTL+    +  + KC + R  ++S++C +Y
Sbjct: 7   YSLYLVTSSSLIAPGSTIERQVEEGILGGVTLVQHREKDISTKCFVERAKRLSEICKKY 65


>SPAC1687.17c |||Der1-like |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 168

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = +1

Query: 199 FAYVIFVRPLYSFSLLYVKVDGYTINRLWLLPVRDV 306
           F+Y+ F    +SF++LY+    + + R+ +L + DV
Sbjct: 90  FSYMPFAASYFSFTMLYIWSWKHPLYRISILGLFDV 125


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,874,309
Number of Sequences: 5004
Number of extensions: 36250
Number of successful extensions: 61
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)