Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_P11
         (455 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0034 - 6246183-6246553,6246672-6249699                           28   4.1  
02_02_0032 - 6227556-6227926,6228322-6231085                           27   7.2  
03_02_0717 - 10643285-10643584,10643877-10644020,10646241-106463...    27   9.5  

>02_02_0034 - 6246183-6246553,6246672-6249699
          Length = 1132

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 20/54 (37%), Positives = 29/54 (53%)
 Frame = +2

Query: 125 ANKLLTGLRVPLTIPDKGDKKKTKILPT*YLYGPYILSLSYMLKLTVIR*IVSG 286
           AN  L G R+P  I ++    ++ IL T  L GP   SL+ M KL +I  + +G
Sbjct: 374 ANNSLIG-RLPQDIGNRLPNLQSLILSTIQLNGPIPASLANMTKLEMIYLVATG 426


>02_02_0032 - 6227556-6227926,6228322-6231085
          Length = 1044

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 20/48 (41%), Positives = 26/48 (54%)
 Frame = +2

Query: 125 ANKLLTGLRVPLTIPDKGDKKKTKILPT*YLYGPYILSLSYMLKLTVI 268
           AN  L G R+P  I ++    +T IL T  L GP   SL+ M KL +I
Sbjct: 374 ANNSLIG-RLPPDIGNRLPNLETLILSTTQLNGPIPASLANMSKLEMI 420


>03_02_0717 -
           10643285-10643584,10643877-10644020,10646241-10646321,
           10646506-10646589
          Length = 202

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 214 FVRPLYSFSLLYVKVDGYTINRLWLLPV 297
           + +P   + + +V V   TIN LWL+P+
Sbjct: 79  YTQPARCYMIAFVLVYTNTINHLWLMPL 106


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,636,968
Number of Sequences: 37544
Number of extensions: 213747
Number of successful extensions: 358
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 358
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)