Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_P09
(488 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1687.13c |csn5||COP9/signalosome complex subunit Csn5|Schizo... 203 1e-53
SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulat... 126 2e-30
SPCC1682.10 |rpn8||19S proteasome regulatory subunit Rpn8|Schizo... 49 4e-07
SPAC19B12.10 |sst2||human AMSH protein homolog|Schizosaccharomyc... 37 0.001
SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase |Schizosa... 32 0.053
SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex s... 31 0.12
SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr 1... 27 1.1
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c... 25 6.1
SPAC23A1.02c |||phosphoprotein phosphatase |Schizosaccharomyces ... 25 6.1
SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|c... 25 6.1
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 25 8.1
>SPAC1687.13c |csn5||COP9/signalosome complex subunit
Csn5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 299
Score = 203 bits (495), Expect = 1e-53
Identities = 88/158 (55%), Positives = 116/158 (73%)
Frame = +1
Query: 13 YDKKQQQDILAAKPWEKDPHFFKDIKISALALLKMVMHARSGGTLEVMGLLLGKVDANTM 192
+D+++++ + PW+ DP FF+ +KISA+ALLKM+ H G LEVMG + GKV+ ++
Sbjct: 11 FDEEKERAKIRESPWKHDPEFFRSVKISAVALLKMLRHVSQGMPLEVMGYVQGKVEGASL 70
Query: 193 IVMDSFALPVEGTETRVNAQAQAYEYMTAYIEAAKQVGRHENAIGWYHSHPGYGCWLSGI 372
I++DSFALPVEGTETRVNA +A EY Y K V RHEN IGWYHSHP YGCWLSG+
Sbjct: 71 IILDSFALPVEGTETRVNAHEEAQEYSVQYHTLCKSVYRHENVIGWYHSHPNYGCWLSGV 130
Query: 373 DVSTQMLNQNFHEPFVAIVIDPVRTISAGKVCLGAFRT 486
DV TQ NQ + +PFVA+V+DP R++ + V +GAFRT
Sbjct: 131 DVETQRQNQKYQDPFVAVVLDPKRSLESPYVNIGAFRT 168
>SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulatory
subunit Rpn11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 308
Score = 126 bits (303), Expect = 2e-30
Identities = 62/134 (46%), Positives = 88/134 (65%), Gaps = 1/134 (0%)
Frame = +1
Query: 85 IKISALALLKMVMHARSGGTLEVMGLLLGK-VDANTMIVMDSFALPVEGTETRVNAQAQA 261
+ IS+LALLKM+ H R G +EVMGL+LG+ VD T+ V+D FA+P GT V A
Sbjct: 30 VYISSLALLKMLRHGRHGTPMEVMGLMLGEFVDDFTVRVVDVFAMPQSGTGVSVEAVDPV 89
Query: 262 YEYMTAYIEAAKQVGRHENAIGWYHSHPGYGCWLSGIDVSTQMLNQNFHEPFVAIVIDPV 441
++ ++ KQ GR E +GWYHSHPG+GCWLS +D++TQ + VA+V+DP+
Sbjct: 90 FQ--KNMMDMLKQTGRPEMVVGWYHSHPGFGCWLSSVDINTQQSFEQLTPRAVAVVVDPI 147
Query: 442 RTISAGKVCLGAFR 483
+++ GKV + AFR
Sbjct: 148 QSVK-GKVVIDAFR 160
>SPCC1682.10 |rpn8||19S proteasome regulatory subunit
Rpn8|Schizosaccharomyces pombe|chr 3|||Manual
Length = 324
Score = 48.8 bits (111), Expect = 4e-07
Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 3/92 (3%)
Frame = +1
Query: 79 KDIKISALALLKMV-MHARS--GGTLEVMGLLLGKVDANTMIVMDSFALPVEGTETRVNA 249
+ + + L LL V + RS G V+G+LLG+ + + + V +S+A+P E E +
Sbjct: 15 QQVIVHPLVLLSAVDSYNRSAKGTKRRVVGILLGQNNGDVVNVANSYAIPFEEDEKNASV 74
Query: 250 QAQAYEYMTAYIEAAKQVGRHENAIGWYHSHP 345
+ +M + E K++ +E +GWYH+ P
Sbjct: 75 WFLDHNFMESMNEMFKKINANEKLVGWYHTGP 106
>SPAC19B12.10 |sst2||human AMSH protein homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 435
Score = 37.1 bits (82), Expect = 0.001
Identities = 26/105 (24%), Positives = 43/105 (40%), Gaps = 2/105 (1%)
Frame = +1
Query: 145 LEVMGLLLGKVDANTMIVMDSFALPVEGTETRVNA--QAQAYEYMTAYIEAAKQVGRHEN 318
LE G+L GK+ N + E T +A +E+ + +
Sbjct: 285 LETCGILCGKLRQNAFFITHLVIPLQEATSDTCGTTDEASLFEFQDKH---------NLL 335
Query: 319 AIGWYHSHPGYGCWLSGIDVSTQMLNQNFHEPFVAIVIDPVRTIS 453
+GW H+HP C++S +D+ T Q +AIV+ P + S
Sbjct: 336 TLGWIHTHPTQTCFMSSVDLHTHCSYQLMLPEAIAIVMAPSKNTS 380
>SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 475
Score = 31.9 bits (69), Expect = 0.053
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Frame = -3
Query: 390 HL-CRDIYTRKPTSVPRVTVIPTNGILMTAHLFCCF-NICCHIFVSLSLCIDTSFSTFYR 217
HL C+ I TS T + NG + + +F F ++ F + TSFS
Sbjct: 352 HLACKKIPFYDVTSHHYTTPLNPNGYKLESFIFDLFPSVSVENFGCFQVPRRTSFSPLKN 411
Query: 216 ESKRVHNNHSVCVN 175
SK ++NH CVN
Sbjct: 412 SSKSPNDNHETCVN 425
>SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex
subunit Res2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 657
Score = 30.7 bits (66), Expect = 0.12
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +1
Query: 274 TAYIEAAKQVGRHENAIGWYHSHPG-YGCWLSGIDVSTQMLNQNFHEPFVAIVIDPVRTI 450
T +E Q+G HE G Y + G + + G+D++T+ P +++ ID + I
Sbjct: 54 TRVLERQVQIGAHEKVQGGYGKYQGTWVPFQRGVDLATKYKVDGIMSPILSLDIDEGKAI 113
Query: 451 SAGK 462
+ K
Sbjct: 114 APKK 117
>SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 588
Score = 27.5 bits (58), Expect = 1.1
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -1
Query: 113 FKSARAEILISLKKCGSFSHGFAARISCCCFLSY 12
FK A A+ +I L+ S+SH F + CC L +
Sbjct: 344 FKQA-ADAIIELEDLNSWSHAFYRYFAGCCLLQH 376
>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 571
Score = 25.0 bits (52), Expect = 6.1
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = +1
Query: 175 VDANTMIVMDSFALPVEGTETRVNAQAQAYEYMTAYIEAAKQVGRHENAIGW-YHSHPGY 351
V T MDSF + +GT + ++ + AY++ ++ RH I W SHP
Sbjct: 461 VSQQTETEMDSFEVKKDGTSGPNHLVVESRSHQHAYVQ--DEI-RHRGDIVWSVLSHPHG 517
Query: 352 GCWLSG 369
+L G
Sbjct: 518 KVYLCG 523
>SPAC23A1.02c |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 430
Score = 25.0 bits (52), Expect = 6.1
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +3
Query: 90 NLGSRTFENGNARPIW 137
+L +RTFENGN P+W
Sbjct: 142 SLPARTFENGNI-PVW 156
>SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 596
Score = 25.0 bits (52), Expect = 6.1
Identities = 7/20 (35%), Positives = 15/20 (75%)
Frame = -3
Query: 111 QKCESRDFDIFEKMWIFLPW 52
Q+ +++ ++EK WIF+P+
Sbjct: 79 QRHNKQEYVVYEKNWIFVPY 98
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1207
Score = 24.6 bits (51), Expect = 8.1
Identities = 24/108 (22%), Positives = 44/108 (40%), Gaps = 2/108 (1%)
Frame = +1
Query: 4 ARGYDKKQQQDILAAKPWEKDPHFFKDIKISALALLKMV--MHARSGGTLEVMGLLLGKV 177
AR D+ + LA+ H +I L + + ++ +G ++ + +
Sbjct: 672 ARTIDRPEVWSRLASDAMSYGNHKIAEITFQKLRYFEKLSFLYLITGNAEKLQKMAIIAE 731
Query: 178 DANTMIVMDSFALPVEGTETRVNAQAQAYEYMTAYIEAAKQVGRHENA 321
N + + +L + E+R+N QA Y AY+ AK G E A
Sbjct: 732 KRNDTLSLFQNSLYLNEVESRINILEQAGMYPIAYL-TAKSNGLEEKA 778
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,106,707
Number of Sequences: 5004
Number of extensions: 43005
Number of successful extensions: 152
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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