Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_P09
(488 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1418 + 33428527-33428895,33429206-33429280,33429697-334299... 226 8e-60
05_04_0078 + 17725931-17726057,17726128-17726305,17726942-177270... 134 4e-32
01_01_1151 + 9165454-9165580,9165658-9165835,9167256-9167337,916... 134 4e-32
01_06_0147 + 26997641-26997688,26997783-26997857,26997966-269980... 46 1e-05
01_05_0018 - 17208358-17208367,17208485-17208537,17209321-172093... 40 8e-04
07_01_0213 - 1573315-1573485,1573583-1573765,1573858-1574046,157... 39 0.002
09_03_0137 + 12667763-12667930,12668715-12668779,12668879-126689... 38 0.003
01_03_0156 + 13279354-13279479,13279722-13279790,13280102-132802... 33 0.093
08_01_0495 - 4309816-4310592 30 0.87
04_04_0844 - 28637393-28638118,28638206-28638283,28638431-286386... 29 2.6
01_06_0986 - 33602714-33602741,33603037-33603146,33603401-336036... 28 3.5
03_05_0728 - 27174157-27174408,27175316-27175364,27175454-271755... 27 6.1
07_03_1615 - 28157237-28157472,28157649-28157728,28157853-281580... 27 8.1
>04_04_1418 +
33428527-33428895,33429206-33429280,33429697-33429978,
33430058-33430205,33430309-33430388,33431238-33431318,
33431416-33431514
Length = 377
Score = 226 bits (552), Expect = 8e-60
Identities = 111/183 (60%), Positives = 129/183 (70%), Gaps = 25/183 (13%)
Frame = +1
Query: 13 YDKKQQQDILAAKPWEKDPHFFKDIKISALALLKMVMHARSGGTLEVMGLLLGKVDANTM 192
YD+ Q + KPW DPH F+ KISALALLKMV+HAR+GGT+EVMGL+ GK + + +
Sbjct: 28 YDEAAQARVQQEKPWANDPHPFRRAKISALALLKMVVHARAGGTIEVMGLMQGKCEGDAI 87
Query: 193 IVMDSFALPVEGTETRVNAQAQAYEYMTAYIEAAKQVGRH-------------------- 312
+VMD+FALPVEGTETRVNAQA AYEYM Y KQ+G H
Sbjct: 88 VVMDAFALPVEGTETRVNAQADAYEYMVEYSTINKQIGSHHAIDHNVSEVSVFANTLMTD 147
Query: 313 -----ENAIGWYHSHPGYGCWLSGIDVSTQMLNQNFHEPFVAIVIDPVRTISAGKVCLGA 477
EN +GWYHSHPGYGCWLSGIDVSTQMLNQ F EPF+A+VIDP RT+SAGKV +GA
Sbjct: 148 LAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGA 207
Query: 478 FRT 486
FRT
Sbjct: 208 FRT 210
>05_04_0078 +
17725931-17726057,17726128-17726305,17726942-17727023,
17728500-17728676,17728763-17728930,17729028-17729219
Length = 307
Score = 134 bits (324), Expect = 4e-32
Identities = 65/136 (47%), Positives = 95/136 (69%), Gaps = 1/136 (0%)
Frame = +1
Query: 79 KDIKISALALLKMVMHARSGGTLEVMGLLLGK-VDANTMIVMDSFALPVEGTETRVNAQA 255
+ + IS+LALLKM+ H R+G +EVMGL+LG+ VD T+ V+D FA+P GT V+ +A
Sbjct: 27 EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVRVVDVFAMPQSGTG--VSVEA 84
Query: 256 QAYEYMTAYIEAAKQVGRHENAIGWYHSHPGYGCWLSGIDVSTQMLNQNFHEPFVAIVID 435
+ + T ++ KQ GR E +GWYHSHPG+GCWLSG+D++TQ + + VA+VID
Sbjct: 85 VDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNPRAVAVVID 144
Query: 436 PVRTISAGKVCLGAFR 483
P++++ GKV + AFR
Sbjct: 145 PIQSVK-GKVVIDAFR 159
>01_01_1151 +
9165454-9165580,9165658-9165835,9167256-9167337,
9167907-9168083,9168174-9168341,9168466-9168657
Length = 307
Score = 134 bits (324), Expect = 4e-32
Identities = 65/136 (47%), Positives = 95/136 (69%), Gaps = 1/136 (0%)
Frame = +1
Query: 79 KDIKISALALLKMVMHARSGGTLEVMGLLLGK-VDANTMIVMDSFALPVEGTETRVNAQA 255
+ + IS+LALLKM+ H R+G +EVMGL+LG+ VD T+ V+D FA+P GT V+ +A
Sbjct: 27 EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVRVVDVFAMPQSGTG--VSVEA 84
Query: 256 QAYEYMTAYIEAAKQVGRHENAIGWYHSHPGYGCWLSGIDVSTQMLNQNFHEPFVAIVID 435
+ + T ++ KQ GR E +GWYHSHPG+GCWLSG+D++TQ + + VA+VID
Sbjct: 85 VDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNPRAVAVVID 144
Query: 436 PVRTISAGKVCLGAFR 483
P++++ GKV + AFR
Sbjct: 145 PIQSVK-GKVVIDAFR 159
>01_06_0147 +
26997641-26997688,26997783-26997857,26997966-26998052,
26998566-26998622,26998867-26998959,26999528-26999600,
26999830-26999905,27000217-27000280,27000951-27000980,
27001251-27001367,27002742-27002782,27002870-27003176,
27003279-27003368,27003479-27003541,27003678-27003752,
27003922-27003984,27004714-27004784,27004885-27005068
Length = 537
Score = 46.4 bits (105), Expect = 1e-05
Identities = 26/56 (46%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Frame = +1
Query: 325 GWYHSHPGYGCWLSGIDVSTQMLNQNFHEPFVAIVI---DPVRTISAGKVCLGAFR 483
GW H+HP C+LS ID+ TQ Q VAIVI DP R + G+ C G FR
Sbjct: 429 GWIHTHPSQTCFLSSIDLHTQYSYQVMLPEAVAIVIAPTDPTRQVFYGRNC-GIFR 483
>01_05_0018 -
17208358-17208367,17208485-17208537,17209321-17209383,
17209971-17210045,17210090-17210104,17210983-17211045,
17211129-17211218,17211396-17211714,17211814-17211860,
17211949-17212054,17212539-17212592,17212806-17212912,
17212996-17213160,17213383-17213476,17213572-17213636,
17213841-17213969
Length = 484
Score = 40.3 bits (90), Expect = 8e-04
Identities = 28/121 (23%), Positives = 50/121 (41%)
Frame = +1
Query: 85 IKISALALLKMVMHARSGGTLEVMGLLLGKVDANTMIVMDSFALPVEGTETRVNAQAQAY 264
+ ++ + V A + LE G+L G + T V + +P + + + ++ +
Sbjct: 362 VPVTLMECFLRVAEANTANNLETCGILAGTLKKRTFYVT-TLIIPKQRSTSDSHSTQKCQ 420
Query: 265 EYMTAYIEAAKQVGRHENAIGWYHSHPGYGCWLSGIDVSTQMLNQNFHEPFVAIVIDPVR 444
I + G +GW H+HP C+LS ID+ Q +AIV+ P
Sbjct: 421 ATNEEEIFEVQDKGSLFT-LGWIHTHPTQTCFLSSIDLHNHYSYQVMLPEAIAIVMAPTD 479
Query: 445 T 447
T
Sbjct: 480 T 480
>07_01_0213 -
1573315-1573485,1573583-1573765,1573858-1574046,
1574182-1574263,1574315-1574421,1575086-1575161,
1575457-1575637,1575711-1575828
Length = 368
Score = 38.7 bits (86), Expect = 0.002
Identities = 19/44 (43%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Frame = +1
Query: 91 ISALALLKMVMHARSGGTLEVMGLLLG-KVDANTMIVMDSFALP 219
+S LALLK+++HA + MG++LG +VD ++ V+D+F LP
Sbjct: 28 VSPLALLKILVHAARDSPVAAMGVILGEEVDGFSVRVVDAFPLP 71
Score = 34.3 bits (75), Expect = 0.053
Identities = 16/58 (27%), Positives = 29/58 (50%)
Frame = +1
Query: 313 ENAIGWYHSHPGYGCWLSGIDVSTQMLNQNFHEPFVAIVIDPVRTISAGKVCLGAFRT 486
E +GWY S+PG+ S D + + + + +DPV++ + G + AFR+
Sbjct: 163 EGVVGWYRSNPGFYGRPSNHDSVFHKAFEQLNPRAILVAVDPVKS-ATGNFTMNAFRS 219
>09_03_0137 +
12667763-12667930,12668715-12668779,12668879-12668954,
12669142-12669339,12669716-12669795,12670670-12670913,
12671061-12671162,12671243-12671305,12671550-12671627,
12671905-12671967,12672163-12672209,12672328-12672496
Length = 450
Score = 38.3 bits (85), Expect = 0.003
Identities = 25/101 (24%), Positives = 49/101 (48%), Gaps = 2/101 (1%)
Frame = +1
Query: 142 TLEVMGLLLG--KVDANTMIVMDSFALPVEGTETRVNAQAQAYEYMTAYIEAAKQVGRHE 315
+LE G++ G +VD + + + + + T + +A E + ++ +Q+G
Sbjct: 296 SLETCGIIAGTLRVDMDVKYFIATDLIIPKQESTSYSREATNEEEI---LDIFEQLGSPS 352
Query: 316 NAIGWYHSHPGYGCWLSGIDVSTQMLNQNFHEPFVAIVIDP 438
+ +GW H+HP C++S +D+ NQ AIV+ P
Sbjct: 353 H-LGWIHTHPTQECFMSSVDLHNHYSNQKDLREAFAIVVAP 392
>01_03_0156 +
13279354-13279479,13279722-13279790,13280102-13280272,
13280358-13280464,13281332-13281437,13281540-13281586,
13283429-13283747,13283917-13284006,13284095-13284157,
13284303-13284377,13285379-13285441,13286677-13286700,
13286926-13286978,13287687-13287861
Length = 495
Score = 33.5 bits (73), Expect = 0.093
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 322 IGWYHSHPGYGCWLSGIDVSTQMLNQN 402
+GW H+HP C+LS ID+ QN
Sbjct: 387 LGWIHTHPTQSCFLSSIDLHNHYSYQN 413
>08_01_0495 - 4309816-4310592
Length = 258
Score = 30.3 bits (65), Expect = 0.87
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +3
Query: 27 TTRYPCCEAMGERSTFFQRYQNLGSRTFENG 119
TTR+ C +A G++ F QR++ L RTF G
Sbjct: 23 TTRHGCLQASGDQQDFSQRFR-LARRTFHLG 52
>04_04_0844 -
28637393-28638118,28638206-28638283,28638431-28638607,
28639124-28639537
Length = 464
Score = 28.7 bits (61), Expect = 2.6
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = -3
Query: 144 SSTRSGVHYHFQKCESRDFDIFEKMWIFLPWLRSKDILLLLLVIPSCP 1
S RSG H+H C S + + + +P SKD +PS P
Sbjct: 278 SRRRSGSHHHHSSCSSMTSEQKSRSYATMPESPSKDSTTAQQSVPSPP 325
>01_06_0986 -
33602714-33602741,33603037-33603146,33603401-33603601,
33604605-33604697,33604937-33605182,33606007-33606372,
33606459-33606599,33607170-33607526
Length = 513
Score = 28.3 bits (60), Expect = 3.5
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +1
Query: 1 GARGYDKKQQQDILAAKPWEK--DPHFFKDIKISALALLKM 117
G G++ +Q +DI+A PWE+ D KD +ALL +
Sbjct: 280 GESGHENEQGEDIIAILPWEEWWDFEVKKDDSNPQIALLPL 320
>03_05_0728 -
27174157-27174408,27175316-27175364,27175454-27175536,
27175673-27175753,27175838-27175894,27176103-27176202,
27176280-27176350,27176427-27176567,27176657-27176863,
27177442-27177612,27177735-27177815,27177887-27177940,
27178040-27178154,27178302-27178441,27178976-27179197,
27179278-27179376,27179461-27179580,27179776-27179981,
27180072-27180249,27180426-27180486,27180587-27180696,
27180765-27180896,27181124-27181165,27181592-27181762,
27181806-27181808,27181848-27181974,27182130-27182164,
27182982-27183083,27183167-27183224,27183314-27183415,
27183513-27183659,27183744-27183880,27183973-27184122,
27184234-27184393,27184930-27185075,27185162-27185305,
27185535-27185663,27186376-27186420,27187103-27187192,
27187473-27187475
Length = 1506
Score = 27.5 bits (58), Expect = 6.1
Identities = 14/65 (21%), Positives = 34/65 (52%)
Frame = -3
Query: 216 ESKRVHNNHSVCVNFTQEQSHNF*SSTRSGVHYHFQKCESRDFDIFEKMWIFLPWLRSKD 37
ES ++++ +C+N+T E+ + + H K E ++ E W ++ ++ ++D
Sbjct: 412 ESFKINSFEQLCINYTNEK-------LQQHFNQHVFKMEQEEYTREEINWSYIEFVDNQD 464
Query: 36 ILLLL 22
+L L+
Sbjct: 465 VLDLI 469
>07_03_1615 -
28157237-28157472,28157649-28157728,28157853-28158009,
28158379-28158565,28158646-28158772,28159218-28159805,
28159898-28160443,28161579-28161620,28162081-28162145,
28162273-28162377,28162682-28162741,28163149-28163237,
28163611-28163732,28163862-28163968,28164041-28164111,
28164377-28164470,28165010-28165247,28166112-28166347
Length = 1049
Score = 27.1 bits (57), Expect = 8.1
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +1
Query: 154 MGLLLGKVDANTMIVMDSFALPVEGTETRVNAQAQAYEYMTAYIEAAKQVGRHE 315
+G G+ N M+++D A +EG + QAQA + I+ Q G+ +
Sbjct: 748 IGAAAGRSLENQMLLLDGQAKAMEGLNHLYSFQAQALQESRETIQKLAQFGQQQ 801
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,843,191
Number of Sequences: 37544
Number of extensions: 282040
Number of successful extensions: 668
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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