Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_P09
         (488 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80814-5|AAB37991.1|  368|Caenorhabditis elegans Cop-9 signaloso...   259   7e-70
U00032-7|AAA50633.1|  319|Caenorhabditis elegans Hypothetical pr...   142   2e-34
AF077534-8|AAC26287.1|  312|Caenorhabditis elegans Proteasome re...   133   8e-32
AF067219-13|AAC17024.1|  362|Caenorhabditis elegans Proteasome r...    39   0.002
Z47808-5|CAA87773.1|  294|Caenorhabditis elegans Hypothetical pr...    33   0.11 
U41263-8|AAC24430.1|  455|Caenorhabditis elegans Hypothetical pr...    31   0.59 
U41263-7|AAC24431.1|  462|Caenorhabditis elegans Hypothetical pr...    30   1.0  
Z70752-3|CAA94755.3|  654|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z81041-6|CAB02788.1|  336|Caenorhabditis elegans Hypothetical pr...    27   5.5  
Z71266-3|CAA95840.1|  292|Caenorhabditis elegans Hypothetical pr...    27   5.5  
DQ340625-1|ABC65813.1|  292|Caenorhabditis elegans chondroitin p...    27   5.5  
U20864-6|AAK68356.1| 1000|Caenorhabditis elegans Hypothetical pr...    27   7.3  
AC006648-12|AAF39861.4|  418|Caenorhabditis elegans Btb and math...    27   7.3  

>U80814-5|AAB37991.1|  368|Caenorhabditis elegans Cop-9 signalosome
           subunit protein 5 protein.
          Length = 368

 Score =  259 bits (635), Expect = 7e-70
 Identities = 116/158 (73%), Positives = 133/158 (84%)
 Frame = +1

Query: 13  YDKKQQQDILAAKPWEKDPHFFKDIKISALALLKMVMHARSGGTLEVMGLLLGKVDANTM 192
           Y+ KQQ +I  AKPW+KDPH+FK IKISA+ALLKM MHA+ GG LE+MGLL G++DAN+ 
Sbjct: 32  YNNKQQVEIRNAKPWDKDPHYFKQIKISAIALLKMTMHAKRGGNLEIMGLLQGRIDANSF 91

Query: 193 IVMDSFALPVEGTETRVNAQAQAYEYMTAYIEAAKQVGRHENAIGWYHSHPGYGCWLSGI 372
           I++D FALPVEGTETRVNAQAQAYEYMT Y E     GR E  +GWYHSHPGYGCWLSGI
Sbjct: 92  IILDVFALPVEGTETRVNAQAQAYEYMTVYSEMCDTEGRKEKVVGWYHSHPGYGCWLSGI 151

Query: 373 DVSTQMLNQNFHEPFVAIVIDPVRTISAGKVCLGAFRT 486
           DVSTQ LNQ F EP+VAIVIDP+RT+SAGKV +GAFRT
Sbjct: 152 DVSTQTLNQKFQEPWVAIVIDPLRTMSAGKVDIGAFRT 189


>U00032-7|AAA50633.1|  319|Caenorhabditis elegans Hypothetical
           protein F37A4.5 protein.
          Length = 319

 Score =  142 bits (343), Expect = 2e-34
 Identities = 71/141 (50%), Positives = 95/141 (67%), Gaps = 1/141 (0%)
 Frame = +1

Query: 67  PHFFKDIKISALALLKMVMHARSGGTLEVMGLLLGK-VDANTMIVMDSFALPVEGTETRV 243
           P   + + IS+LALLKM+ HARSG  LEVMGL+LG  VD  T+ V D FA+P  GT   V
Sbjct: 23  PDTSETVNISSLALLKMLRHARSGIPLEVMGLMLGDFVDDYTINVTDVFAMPQSGTSVTV 82

Query: 244 NAQAQAYEYMTAYIEAAKQVGRHENAIGWYHSHPGYGCWLSGIDVSTQMLNQNFHEPFVA 423
            +    Y+  T +++  K VGR EN +GWYHSHPG+GCWLS +DV+TQ   +  H   VA
Sbjct: 83  ESVDPVYQ--TKHMDLLKLVGRTENVVGWYHSHPGFGCWLSSVDVNTQQSFEALHPRAVA 140

Query: 424 IVIDPVRTISAGKVCLGAFRT 486
           +V+DP++++  GKV L AFR+
Sbjct: 141 VVVDPIQSVK-GKVMLDAFRS 160


>AF077534-8|AAC26287.1|  312|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 11 protein.
          Length = 312

 Score =  133 bits (321), Expect = 8e-32
 Identities = 64/135 (47%), Positives = 92/135 (68%), Gaps = 1/135 (0%)
 Frame = +1

Query: 85  IKISALALLKMVMHARSGGTLEVMGLLLGK-VDANTMIVMDSFALPVEGTETRVNAQAQA 261
           + IS+LALLKM+ H R+G  +EVMGL+LG+ VD  T+ V+D FA+P  GT   V A    
Sbjct: 33  VYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVNVIDVFAMPQSGTGVSVEAVDPV 92

Query: 262 YEYMTAYIEAAKQVGRHENAIGWYHSHPGYGCWLSGIDVSTQMLNQNFHEPFVAIVIDPV 441
           ++     ++  KQ GR E  +GWYHSHPG+GCWLSG+D++TQ   +   +  VA+V+DP+
Sbjct: 93  FQ--AKMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSDRAVAVVVDPI 150

Query: 442 RTISAGKVCLGAFRT 486
           +++  GKV + AFRT
Sbjct: 151 QSVK-GKVVIDAFRT 164


>AF067219-13|AAC17024.1|  362|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 8 protein.
          Length = 362

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 23/92 (25%), Positives = 46/92 (50%), Gaps = 5/92 (5%)
 Frame = +1

Query: 85  IKISALALLKMVMH----ARSGGTLEVMGLLLGKVDAN-TMIVMDSFALPVEGTETRVNA 249
           + +  L LL +V H    +++     V+G+LLG +  + T+ + +SFA+P +  +   + 
Sbjct: 41  VTVHPLVLLSVVDHFNRVSKTQSVKRVVGVLLGSMKKDKTLDIGNSFAVPFDEDDKDKST 100

Query: 250 QAQAYEYMTAYIEAAKQVGRHENAIGWYHSHP 345
                +Y+ +      +V   E  +GWYH+ P
Sbjct: 101 WFLDMDYLESMYGMFYKVAAKEKIVGWYHTGP 132


>Z47808-5|CAA87773.1|  294|Caenorhabditis elegans Hypothetical
           protein D2013.7 protein.
          Length = 294

 Score = 33.1 bits (72), Expect = 0.11
 Identities = 18/69 (26%), Positives = 34/69 (49%)
 Frame = +1

Query: 127 ARSGGTLEVMGLLLGKVDANTMIVMDSFALPVEGTETRVNAQAQAYEYMTAYIEAAKQVG 306
           A++ G  + MG L+G  +  ++ V + FA+P   +   +    Q  + M   I A K+  
Sbjct: 29  AKNTGQEKCMGTLMGYYEKGSIQVTNCFAIPFNESNDDLEIDDQFNQQM---ISALKKTS 85

Query: 307 RHENAIGWY 333
            +E  +GW+
Sbjct: 86  PNEQPVGWF 94


>U41263-8|AAC24430.1|  455|Caenorhabditis elegans Hypothetical
           protein T19D12.10 protein.
          Length = 455

 Score = 30.7 bits (66), Expect = 0.59
 Identities = 15/53 (28%), Positives = 30/53 (56%)
 Frame = -3

Query: 342 VTVIPTNGILMTAHLFCCFNICCHIFVSLSLCIDTSFSTFYRESKRVHNNHSV 184
           +  +P +GIL  + L   +    +++  ++  + T+F  F+R+S +VH N SV
Sbjct: 169 IITMPLSGILCESSLG--WRSIYYLYGGVAFLVTTAFFAFFRDSAQVHRNVSV 219


>U41263-7|AAC24431.1|  462|Caenorhabditis elegans Hypothetical
           protein T19D12.9 protein.
          Length = 462

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 15/55 (27%), Positives = 29/55 (52%)
 Frame = -3

Query: 351 VPRVTVIPTNGILMTAHLFCCFNICCHIFVSLSLCIDTSFSTFYRESKRVHNNHS 187
           +  + ++P +G+L  + L   +    ++F  +S+     F TF+R+S  VH N S
Sbjct: 171 ISSIILMPVSGVLCESQLG--WRYIFYLFGGISVIAHIIFFTFFRDSATVHRNVS 223


>Z70752-3|CAA94755.3|  654|Caenorhabditis elegans Hypothetical
           protein F25B3.3 protein.
          Length = 654

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -3

Query: 273 HIFVSLSLCIDTSFSTFYRESKRVHNNHSVC 181
           H ++S SL + T F  FY+E++ V    +VC
Sbjct: 48  HQWLSDSLSLITHFVNFYQETRNVEQREAVC 78


>Z81041-6|CAB02788.1|  336|Caenorhabditis elegans Hypothetical
           protein C27A7.7 protein.
          Length = 336

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 11/48 (22%), Positives = 24/48 (50%)
 Frame = -3

Query: 336 VIPTNGILMTAHLFCCFNICCHIFVSLSLCIDTSFSTFYRESKRVHNN 193
           ++ T+  ++   L  CF IC  I++  ++      +   + +KR+H N
Sbjct: 195 ILRTSTAIIIVTLISCFTICFCIWIGWTIQSKLKVADMSKTTKRMHRN 242


>Z71266-3|CAA95840.1|  292|Caenorhabditis elegans Hypothetical
           protein R06C7.4 protein.
          Length = 292

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 154 MGLLLGKVDANTMIVMDSFALPVEGTETRVNAQAQA 261
           +G+L   V AN+ +V+DS  L +  TET     A A
Sbjct: 151 LGILSNIVLANSQMVLDSARLSLNETETETGTSAPA 186


>DQ340625-1|ABC65813.1|  292|Caenorhabditis elegans chondroitin
           proteoglycan-3 protein.
          Length = 292

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 154 MGLLLGKVDANTMIVMDSFALPVEGTETRVNAQAQA 261
           +G+L   V AN+ +V+DS  L +  TET     A A
Sbjct: 151 LGILSNIVLANSQMVLDSARLSLNETETETGTSAPA 186


>U20864-6|AAK68356.1| 1000|Caenorhabditis elegans Hypothetical
           protein F32A5.2a protein.
          Length = 1000

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -1

Query: 230 VPSTGRANESITIIVFASTLPRSNPITSKVPP 135
           +P+T R   ++T     +T P+S   T+ VPP
Sbjct: 189 IPTTTRIPTTVTTTTETTTTPQSTTTTTTVPP 220


>AC006648-12|AAF39861.4|  418|Caenorhabditis elegans Btb and math
           domain containingprotein 19 protein.
          Length = 418

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 207 RVHNNHSVCVNFTQEQSHNF 148
           ++H  H  C NF  E+S NF
Sbjct: 348 QIHRLHQKCANFLSEKSENF 367


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,782,044
Number of Sequences: 27780
Number of extensions: 249618
Number of successful extensions: 709
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 914086948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)