Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_P07
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha...    26   3.8  
SPBC1773.08c |||mannosyltransferase complex subunit |Schizosacch...    25   5.1  
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   8.9  

>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1011

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 161 WISLLWRH*WSSAWTARSTARL 226
           W+++ W   W S W AR  A++
Sbjct: 271 WMAIWWEIIWLSIWAARYAAKV 292


>SPBC1773.08c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 391

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -2

Query: 443 G*NHKFVSHCLQTKIGDMPPIKLISEFKETVGGCKLQ 333
           G  H  + HC Q+   +   I  +SE + T GGC  Q
Sbjct: 343 GYRHSDIHHCGQSLGCNCECIPELSEIESTSGGCVTQ 379


>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1098

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 188 WSSAWTARSTARLNTNKLED 247
           WS+ W++ ST     NKLE+
Sbjct: 380 WSTTWSSVSTFASEDNKLEE 399


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,133,062
Number of Sequences: 5004
Number of extensions: 41738
Number of successful extensions: 91
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)