Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_P06
         (482 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222291-1|ABN79651.1|  374|Tribolium castaneum cardioactive pep...    23   1.5  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   7.9  
AY819656-1|AAV70656.1|   56|Tribolium castaneum elongation facto...    21   7.9  

>EF222291-1|ABN79651.1|  374|Tribolium castaneum cardioactive
           peptide receptor 1 protein.
          Length = 374

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = -1

Query: 389 FFLLFSPEYFIFDLL*VF 336
           F L +SP Y IFDLL VF
Sbjct: 260 FILCWSP-YIIFDLLQVF 276


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 7/22 (31%), Positives = 16/22 (72%)
 Frame = +3

Query: 327 KIDEHLQKIKDEVLRAKQEEET 392
           +ID + +  +D+++  +QE+ET
Sbjct: 334 RIDRNTRFNQDKIVALRQEQET 355


>AY819656-1|AAV70656.1|   56|Tribolium castaneum elongation factor
           1-alpha protein.
          Length = 56

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +2

Query: 422 SVT*EARXQEMHHKA 466
           ++T E +  EMHH+A
Sbjct: 35  NITTEVKSVEMHHEA 49


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,018
Number of Sequences: 336
Number of extensions: 1151
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 11352204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)