Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_P06
         (482 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual          26   2.6  
SPBC36.01c |||spermidine family transporter |Schizosaccharomyces...    26   3.4  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    26   3.4  
SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr 3|||Ma...    25   4.5  

>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 674

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
 Frame = +1

Query: 337 NTYRRSKMKYSGLN---RRKKLRFKRILS*KKCYVRSTMXRNASQSWTRW 477
           N Y +      GLN    +K L+F RIL+   C    T  +N S  W  W
Sbjct: 241 NIYVKGSSPSDGLNVIEEKKILKFDRILADVPCSGDGTFRKNLS-LWREW 289


>SPBC36.01c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 580

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +3

Query: 318 TSRKIDEHLQKIKDEVLRAKQEEETKVQADIILKEVL 428
           T  K+ E+ +   ++++ A+ EEE+    DII+  +L
Sbjct: 324 TENKVQEYREITGNQLVHARSEEESLSARDIIMNYLL 360


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2104

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = +3

Query: 324  RKIDEHLQKIKDEVLRAKQEEETKVQ 401
            R+++E L ++ DE+L  ++  +TKVQ
Sbjct: 1003 RELNEKLMRLDDELLLKQRSYDTKVQ 1028


>SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 506

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -3

Query: 159 YFSQFLPTSISSPHQK*KIFPHLIQHFYLSIAGF 58
           YFS +L    SSP Q+ K +  L+   ++S+A F
Sbjct: 150 YFSYYLKYENSSPEQRKKAYSSLLG--FISVAAF 181


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,332,414
Number of Sequences: 5004
Number of extensions: 18790
Number of successful extensions: 52
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)