Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_P06
         (482 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0321 - 8934512-8935504,8935581-8935715,8935831-8936217           31   0.64 
12_02_0449 - 19167167-19167300,19167394-19167550,19168527-191685...    27   6.0  
11_06_0599 + 25395606-25395705,25396465-25396544,25396901-253969...    27   6.0  
02_01_0266 - 1758439-1758599,1758682-1758769,1759363-1759564,175...    27   6.0  
08_01_0186 - 1561695-1561958,1562041-1562183,1562260-1562326,156...    27   7.9  

>02_02_0321 - 8934512-8935504,8935581-8935715,8935831-8936217
          Length = 504

 Score = 30.7 bits (66), Expect = 0.64
 Identities = 15/34 (44%), Positives = 25/34 (73%)
 Frame = +3

Query: 336 EHLQKIKDEVLRAKQEEETKVQADIILKEVLRKK 437
           E + + +DEV+R K+EE+ ++QA+  LK+V R K
Sbjct: 92  EEMVRERDEVIRRKEEEQGRLQAE--LKKVQRAK 123


>12_02_0449 -
           19167167-19167300,19167394-19167550,19168527-19168539,
           19170218-19170540
          Length = 208

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 14/29 (48%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
 Frame = +3

Query: 348 KIKDEVLRAKQEEETKVQADI-ILKEVLR 431
           K+  E LRAKQEE  K ++DI +L+ ++R
Sbjct: 168 KLHMEELRAKQEEIAKKESDIKVLEAIIR 196


>11_06_0599 +
           25395606-25395705,25396465-25396544,25396901-25396966,
           25397076-25397123,25397226-25397293,25397404-25397476,
           25397573-25397734,25398042-25398236,25398325-25398413,
           25398487-25398676
          Length = 356

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -3

Query: 168 FEAYFSQFLPTSISSPHQK*KIFPHLIQHF 79
           F AYFS  +P +I   HQ   I PHL  +F
Sbjct: 222 FAAYFSDQVPRTIRVTHQN-DIVPHLPPYF 250


>02_01_0266 -
           1758439-1758599,1758682-1758769,1759363-1759564,
           1759664-1759800,1760169-1760268,1760350-1760522,
           1760797-1760941,1761018-1761139,1761225-1761470,
           1761962-1762182,1762278-1762338,1762409-1762487,
           1762572-1762651,1763221-1763292,1763382-1763449,
           1763550-1763588,1763828-1763903,1763992-1764006
          Length = 694

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +3

Query: 330 IDEHLQKIKDEVLRAKQEEETKVQADIILKEVLRKKHD 443
           + E +QK+KDE+       E++      L+  L KKH+
Sbjct: 412 LQEEIQKLKDEINNLNSYIESRKSESSKLESALAKKHN 449


>08_01_0186 -
           1561695-1561958,1562041-1562183,1562260-1562326,
           1562417-1562529,1562603-1562671,1563831-1563870,
           1563965-1564035,1565872-1566027,1566104-1566152,
           1566228-1567631
          Length = 791

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +3

Query: 321 SRKIDEHLQKIKDEVLRAKQEEETKVQADIILKEVLRKK 437
           ++K  E LQ   +E+ R ++EE  ++QA+    E  RK+
Sbjct: 636 AKKDPEKLQHDMEELERLRREERARIQAEAKAAEDARKR 674


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,653,281
Number of Sequences: 37544
Number of extensions: 94988
Number of successful extensions: 272
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 272
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)