Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_P06
(482 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical pr... 27 5.4
Z92811-5|CAN86600.1| 1580|Caenorhabditis elegans Hypothetical pr... 27 7.1
Z92811-4|CAB07273.2| 1605|Caenorhabditis elegans Hypothetical pr... 27 7.1
Z82271-8|CAN86621.1| 1580|Caenorhabditis elegans Hypothetical pr... 27 7.1
Z82271-7|CAB05214.2| 1605|Caenorhabditis elegans Hypothetical pr... 27 7.1
Z50806-1|CAA90689.1| 179|Caenorhabditis elegans Hypothetical pr... 27 7.1
U29378-8|ABA54423.1| 354|Caenorhabditis elegans Hypothetical pr... 27 7.1
U29378-7|AAA68722.2| 362|Caenorhabditis elegans Hypothetical pr... 27 7.1
AB035591-1|BAB18763.1| 1609|Caenorhabditis elegans kinesin like ... 27 7.1
Z50027-2|CAA90335.1| 188|Caenorhabditis elegans Hypothetical pr... 27 9.4
>Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical protein
T28C6.9 protein.
Length = 1861
Score = 27.5 bits (58), Expect = 5.4
Identities = 14/60 (23%), Positives = 34/60 (56%), Gaps = 8/60 (13%)
Frame = +3
Query: 327 KIDEHLQKIKDEVLRAKQEEETKVQADIILK--------EVLRKKHDXKKCITKLDALVK 482
++++H+++++D+V ++ ET + +L+ E + K HD +K + +L A+ K
Sbjct: 1009 QLEQHVKELEDQVAELMEQHETHFRQAQLLQSATSSANTENISKVHDSEKEVQRLSAIEK 1068
>Z92811-5|CAN86600.1| 1580|Caenorhabditis elegans Hypothetical
protein T01G1.1c protein.
Length = 1580
Score = 27.1 bits (57), Expect = 7.1
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +3
Query: 333 DEHLQKIKDEVLRAKQEEETKVQADIILKEVLRKKHDXKKCITKLD 470
+E L + +DE KQE+E I L EV+ + +K I +L+
Sbjct: 575 EEDLDEDEDETAEEKQEQEESEALQIDLSEVMIELDIKEKLIDQLE 620
>Z92811-4|CAB07273.2| 1605|Caenorhabditis elegans Hypothetical
protein T01G1.1a protein.
Length = 1605
Score = 27.1 bits (57), Expect = 7.1
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +3
Query: 333 DEHLQKIKDEVLRAKQEEETKVQADIILKEVLRKKHDXKKCITKLD 470
+E L + +DE KQE+E I L EV+ + +K I +L+
Sbjct: 575 EEDLDEDEDETAEEKQEQEESEALQIDLSEVMIELDIKEKLIDQLE 620
>Z82271-8|CAN86621.1| 1580|Caenorhabditis elegans Hypothetical
protein T01G1.1c protein.
Length = 1580
Score = 27.1 bits (57), Expect = 7.1
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +3
Query: 333 DEHLQKIKDEVLRAKQEEETKVQADIILKEVLRKKHDXKKCITKLD 470
+E L + +DE KQE+E I L EV+ + +K I +L+
Sbjct: 575 EEDLDEDEDETAEEKQEQEESEALQIDLSEVMIELDIKEKLIDQLE 620
>Z82271-7|CAB05214.2| 1605|Caenorhabditis elegans Hypothetical
protein T01G1.1a protein.
Length = 1605
Score = 27.1 bits (57), Expect = 7.1
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +3
Query: 333 DEHLQKIKDEVLRAKQEEETKVQADIILKEVLRKKHDXKKCITKLD 470
+E L + +DE KQE+E I L EV+ + +K I +L+
Sbjct: 575 EEDLDEDEDETAEEKQEQEESEALQIDLSEVMIELDIKEKLIDQLE 620
>Z50806-1|CAA90689.1| 179|Caenorhabditis elegans Hypothetical
protein M79.3 protein.
Length = 179
Score = 27.1 bits (57), Expect = 7.1
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -3
Query: 159 YFSQFLPTSISSPHQK*KIFPHLIQHFYLSIAGFPS 52
Y Q+LP + H+ +F IQ + AG PS
Sbjct: 74 YDIQYLPMEVRKEHENNSLFAARIQQVIANAAGIPS 109
>U29378-8|ABA54423.1| 354|Caenorhabditis elegans Hypothetical
protein F08C6.2b protein.
Length = 354
Score = 27.1 bits (57), Expect = 7.1
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +3
Query: 330 IDEHLQKIKDEVLRAKQEEETKVQADII-LKEVLRKKHDXKKCITKLD 470
I+ HL+ +E EEE V+ I+ KEV++K+ K T L+
Sbjct: 306 IEHHLETQDEEEEEEALEEEKVVEQKIVEKKEVVKKRSSRNKAKTPLE 353
>U29378-7|AAA68722.2| 362|Caenorhabditis elegans Hypothetical
protein F08C6.2a protein.
Length = 362
Score = 27.1 bits (57), Expect = 7.1
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +3
Query: 330 IDEHLQKIKDEVLRAKQEEETKVQADII-LKEVLRKKHDXKKCITKLD 470
I+ HL+ +E EEE V+ I+ KEV++K+ K T L+
Sbjct: 314 IEHHLETQDEEEEEEALEEEKVVEQKIVEKKEVVKKRSSRNKAKTPLE 361
>AB035591-1|BAB18763.1| 1609|Caenorhabditis elegans kinesin like
protein KLP-12 protein.
Length = 1609
Score = 27.1 bits (57), Expect = 7.1
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +3
Query: 333 DEHLQKIKDEVLRAKQEEETKVQADIILKEVLRKKHDXKKCITKLD 470
+E L + +DE KQE+E I L EV+ + +K I +L+
Sbjct: 579 EEDLDEDEDETAEEKQEQEESEALQIDLSEVMIELDIKEKLIDQLE 624
>Z50027-2|CAA90335.1| 188|Caenorhabditis elegans Hypothetical
protein C39B10.3 protein.
Length = 188
Score = 26.6 bits (56), Expect = 9.4
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +3
Query: 321 SRKIDEHLQKIKDEVLRAKQEEETKVQADIILKEVL 428
S+K DE L++ +DE +A +E E + LKE++
Sbjct: 91 SKKYDEELEEKRDENKKATKEYEELEKVAANLKEIM 126
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,276,811
Number of Sequences: 27780
Number of extensions: 102596
Number of successful extensions: 384
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 382
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 892829112
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -