Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_P05
         (208 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O17445 Cluster: 60S ribosomal protein L15; n=132; Eukar...    33   1.3  
UniRef50_P61313 Cluster: 60S ribosomal protein L15; n=69; Eukary...    31   3.9  
UniRef50_Q1VS17 Cluster: Putative uncharacterized protein; n=1; ...    30   9.0  
UniRef50_Q38C12 Cluster: Putative uncharacterized protein; n=2; ...    30   9.0  

>UniRef50_O17445 Cluster: 60S ribosomal protein L15; n=132;
           Eukaryota|Rep: 60S ribosomal protein L15 - Drosophila
           melanogaster (Fruit fly)
          Length = 204

 Score = 33.1 bits (72), Expect = 1.3
 Identities = 13/16 (81%), Positives = 15/16 (93%)
 Frame = +1

Query: 10  GHRFSQTKGGSRRAAW 57
           G+R+SQT GGSRRAAW
Sbjct: 177 GYRYSQTIGGSRRAAW 192


>UniRef50_P61313 Cluster: 60S ribosomal protein L15; n=69;
           Eukaryota|Rep: 60S ribosomal protein L15 - Homo sapiens
           (Human)
          Length = 204

 Score = 31.5 bits (68), Expect = 3.9
 Identities = 12/16 (75%), Positives = 13/16 (81%)
 Frame = +1

Query: 10  GHRFSQTKGGSRRAAW 57
           GH+F  T GGSRRAAW
Sbjct: 177 GHKFHHTIGGSRRAAW 192


>UniRef50_Q1VS17 Cluster: Putative uncharacterized protein; n=1;
           Psychroflexus torquis ATCC 700755|Rep: Putative
           uncharacterized protein - Psychroflexus torquis ATCC
           700755
          Length = 184

 Score = 30.3 bits (65), Expect = 9.0
 Identities = 14/24 (58%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = -1

Query: 199 FFLQVKI-YFIRHIGFPFEYKDRN 131
           F L+ KI YF +H+GFPFE K  N
Sbjct: 38  FNLRKKIDYFTKHVGFPFEKKVEN 61


>UniRef50_Q38C12 Cluster: Putative uncharacterized protein; n=2;
           Trypanosoma|Rep: Putative uncharacterized protein -
           Trypanosoma brucei
          Length = 381

 Score = 30.3 bits (65), Expect = 9.0
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +2

Query: 17  ASLKPREVPVAPPGYVATPCNCVASDKQDN 106
           A   PR +P  PP +V TP  CV    +DN
Sbjct: 336 ACFVPRRIPALPPTFVGTP-GCVGMAAEDN 364


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,893,044
Number of Sequences: 1657284
Number of extensions: 3130911
Number of successful extensions: 9342
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9338
length of database: 575,637,011
effective HSP length: 47
effective length of database: 497,744,663
effective search space used: 10452637923
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)