Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_P05
(208 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak... 26 0.59
SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa... 26 0.59
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p... 24 2.4
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc... 24 3.2
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ... 23 4.2
SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit... 23 4.2
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz... 23 5.5
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch... 23 7.3
SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subuni... 22 9.6
SPBC14F5.05c |sam1||S-adenosylmethionine synthetase |Schizosacch... 22 9.6
SPBC24C6.05 |sec28||coatomer epsilon subunit |Schizosaccharomyce... 22 9.6
>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 708
Score = 26.2 bits (55), Expect = 0.59
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = -1
Query: 118 NAESIVLFIACDAVARCCDVTRRR--DGNLPWFERSDV 11
N IVLF AV +CCD+ R GNL ++ D+
Sbjct: 153 NTTDIVLFPFVLAVIKCCDIVHREFLMGNL--YDEEDI 188
>SPBC244.01c |sid4||SIN component scaffold protein Sid4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 26.2 bits (55), Expect = 0.59
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +2
Query: 29 PREVPVAPPGYVATPCNCVASDKQ 100
P PV P GY T CV+S Q
Sbjct: 259 PESYPVPPSGYPLTSSTCVSSISQ 282
>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1040
Score = 24.2 bits (50), Expect = 2.4
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = -2
Query: 177 ILLGTSAFHLNIKTETNRKSMRNPLSCLSLATQLQ 73
++ GT+ TE RK + +SCL + Q Q
Sbjct: 484 VINGTALAIFKKDTEVARKVFESEISCLDFSAQFQ 518
>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1233
Score = 23.8 bits (49), Expect = 3.2
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +3
Query: 45 SRRLVTSQHLATASQAINKTMDSALTFYSFLSLYSNG 155
++ L + HL+ + ++ T S LTF L L+ +G
Sbjct: 1013 TQSLQSFSHLSNHIEVLDSTRQSRLTFLCHLILHMHG 1049
>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1854
Score = 23.4 bits (48), Expect = 4.2
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -1
Query: 94 IACDAVARCCDVTRRRDGNLPWFERSDVPLV 2
IAC + R ++TR+ + L + S PLV
Sbjct: 300 IACLRLTRLLNITRKTETILKSLKESSTPLV 330
>SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit
Prp3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 542
Score = 23.4 bits (48), Expect = 4.2
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = -3
Query: 140 RQKRIESQCGIHCLVYRLR 84
R+K +S G+ CLV+R++
Sbjct: 388 RKKDEDSAAGLRCLVFRIK 406
>SPCC1795.08c |||histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 985
Score = 23.0 bits (47), Expect = 5.5
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +3
Query: 57 VTSQHLATASQAINKTMDSALTFYSFLSLYSNGKPMCLIKY 179
+T H A Q +++++ + LSL G P LIK+
Sbjct: 772 LTGSHARLAQQKLDESLRHSDKVSQHLSLRDEGTPNHLIKH 812
>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1108
Score = 22.6 bits (46), Expect = 7.3
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = +3
Query: 75 ATASQAINKTMDSALTFYSFLS 140
A +N DSAL Y FLS
Sbjct: 784 ALEDDIVNSGFDSALKLYDFLS 805
>SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subunit
Cwg2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 355
Score = 22.2 bits (45), Expect = 9.6
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 114 ALTFYSFLSLYSNGKPMCLIKYIFTC 191
A T S L +S P+C I+YI +C
Sbjct: 155 ATTIASLLD-FSLSDPLCSIQYIKSC 179
>SPBC14F5.05c |sam1||S-adenosylmethionine synthetase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 382
Score = 22.2 bits (45), Expect = 9.6
Identities = 7/8 (87%), Positives = 8/8 (100%)
Frame = -1
Query: 52 RRDGNLPW 29
RRDG+LPW
Sbjct: 155 RRDGSLPW 162
>SPBC24C6.05 |sec28||coatomer epsilon subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 288
Score = 22.2 bits (45), Expect = 9.6
Identities = 6/14 (42%), Positives = 11/14 (78%)
Frame = +2
Query: 143 IFKWKADVPNKIYF 184
+F W+A + N++YF
Sbjct: 1 MFSWEASLSNELYF 14
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 827,009
Number of Sequences: 5004
Number of extensions: 12883
Number of successful extensions: 41
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 48
effective length of database: 2,122,286
effective search space used: 42445720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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