Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_P05
         (208 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0135 - 989616-989702,990746-991013,991229-991566                 26   3.6  
11_01_0774 - 6464482-6466684,6467214-6467920,6467928-6468152           26   4.8  
12_01_0017 - 127617-127775,127920-128000,128284-128395,128486-12...    25   6.3  
05_06_0208 + 26385379-26385485,26385819-26385965,26385994-263860...    25   6.3  
03_01_0458 - 3521938-3522024,3522133-3522213,3522673-3522806,352...    25   6.3  
01_06_1841 + 40267902-40268485,40269290-40270421                       25   6.3  
03_02_0444 - 8543426-8543635,8543945-8544151,8544293-8544400,854...    25   8.4  
02_03_0415 + 18805541-18805610,18805962-18806128,18806616-188066...    25   8.4  

>07_01_0135 - 989616-989702,990746-991013,991229-991566
          Length = 230

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +2

Query: 56  GYVATPCNCVAS 91
           GY  TPCNC++S
Sbjct: 81  GYSCTPCNCISS 92


>11_01_0774 - 6464482-6466684,6467214-6467920,6467928-6468152
          Length = 1044

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 6   RGTSLLSNQGRFPSRRLVTSQHLATASQAINKTMDSA 116
           R +SLL    R   + L T+QHLA   Q + + ++ A
Sbjct: 173 RSSSLLPRTVRATKKLLQTNQHLAQELQRLKRMVEEA 209


>12_01_0017 -
           127617-127775,127920-128000,128284-128395,128486-129538,
           129617-129705,130136-130309,130566-130687,130790-130924,
           131132-131494,131561-131728,131850-131889
          Length = 831

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +2

Query: 8   GDIASLKPREVPVAPPGYVATPCNCVAS 91
           G+I+S+KP  +PV P    +TP N +AS
Sbjct: 355 GNISSVKPPSLPVQPATSDSTP-NVLAS 381


>05_06_0208 +
           26385379-26385485,26385819-26385965,26385994-26386035,
           26386231-26386275,26386375-26386544,26386779-26386864,
           26386953-26387060,26387680-26387809,26388144-26388231,
           26388511-26388555,26388639-26388808,26388931-26389016,
           26389115-26389222,26389332-26389381,26389521-26389725
          Length = 528

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 128 FVSVFIFKWKADVPNK 175
           F SV++ KWK   PNK
Sbjct: 124 FTSVYVMKWKDFFPNK 139


>03_01_0458 -
           3521938-3522024,3522133-3522213,3522673-3522806,
           3523189-3523270,3523420-3523692,3523953-3524162,
           3524252-3524337,3525197-3525289,3526003-3526227,
           3526320-3526930,3529328-3529395,3529491-3529679,
           3529773-3529901,3530013-3532484
          Length = 1579

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +1

Query: 10  GHRFSQTKGGSRRAA 54
           GHR  + KGGSR+AA
Sbjct: 296 GHRADRRKGGSRKAA 310


>01_06_1841 + 40267902-40268485,40269290-40270421
          Length = 571

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 98  VYRLRRSCKVLRRNQAARREPP 33
           VY + R  K+L + +A+RR PP
Sbjct: 331 VYHMLRELKILIQTRASRRVPP 352


>03_02_0444 -
           8543426-8543635,8543945-8544151,8544293-8544400,
           8544744-8544803,8544914-8544989,8545190-8545347,
           8545479-8545541,8545653-8545737,8546423-8547438
          Length = 660

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = +2

Query: 5   EGDIASLKPREVPVAPPGYVATPCNCVASDKQD 103
           EG I  ++P  V + PP  +  P  CV     D
Sbjct: 195 EGGIKGVRPPPVVLKPPPSMVRPAVCVVESTWD 227


>02_03_0415 +
           18805541-18805610,18805962-18806128,18806616-18806645,
           18807459-18807515,18808268-18808337,18808915-18810998
          Length = 825

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = +3

Query: 9   GTSLLSNQGRFPSRRLVTSQHLATASQAINKTMDSALTFYSFLSLYSNGKPMCLIKY 179
           G SL+       +  L+T QH A +    N+T+  A +F +F  L +     CL KY
Sbjct: 695 GASLIIKSVLDRATELLTDQHAAASYTVSNRTLWQA-SFDAFFGLLTK---YCLSKY 747


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,593,048
Number of Sequences: 37544
Number of extensions: 90561
Number of successful extensions: 261
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 261
length of database: 14,793,348
effective HSP length: 48
effective length of database: 12,991,236
effective search space used: 259824720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)