Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_P05
         (208 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    23   0.29 
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   2.0  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   2.0  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    19   4.7  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    19   6.2  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    19   8.2  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    19   8.2  

>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 23.4 bits (48), Expect = 0.29
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +2

Query: 83  VASDKQDNGFRIDFLFVSVFIFKWKADVPNKIYFYL 190
           +  +   NG +I    V + I +WK  VP+ + F+L
Sbjct: 47  IEENNMPNGMQIWNDKVFITIPRWKNGVPSNLNFFL 82


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.6 bits (41), Expect = 2.0
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = -3

Query: 44  REPPLV*EKRCPP 6
           R PP     RCPP
Sbjct: 470 RSPPAFSHSRCPP 482


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.6 bits (41), Expect = 2.0
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = -3

Query: 44  REPPLV*EKRCPP 6
           R PP     RCPP
Sbjct: 470 RSPPAFSHSRCPP 482


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 19.4 bits (38), Expect = 4.7
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -1

Query: 184 KIYFIRHIGFPFEYK 140
           +I FI   GFP EY+
Sbjct: 360 RISFILVHGFPLEYE 374


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 19.0 bits (37), Expect = 6.2
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = +2

Query: 143 IFKWKADVP 169
           IF+W  DVP
Sbjct: 192 IFQWDPDVP 200


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 18.6 bits (36), Expect = 8.2
 Identities = 7/26 (26%), Positives = 14/26 (53%)
 Frame = +2

Query: 29  PREVPVAPPGYVATPCNCVASDKQDN 106
           PR+ P+ P   ++       SDK+++
Sbjct: 291 PRDSPIEPEIEISQNSVSTGSDKENH 316


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
            receptor protein.
          Length = 1040

 Score = 18.6 bits (36), Expect = 8.2
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = +3

Query: 30   QGRFPSRRLVTSQHLATASQAINKTMDSALT 122
            Q   P+R   T     TA+ A +     ALT
Sbjct: 915  QSMMPTRYSTTKSSAVTATNASSMIAPVALT 945


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,311
Number of Sequences: 438
Number of extensions: 962
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 45
effective length of database: 126,633
effective search space used:  2912559
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)