Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_P04
(565 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein L9|Schizosacchar... 202 3e-53
SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein L9|Schizosaccha... 197 8e-52
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 27 1.4
SPAC323.07c |||MatE family transporter|Schizosaccharomyces pombe... 27 1.4
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 27 1.9
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar... 26 3.3
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ... 25 5.8
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 25 5.8
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 25 7.7
SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyc... 25 7.7
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po... 25 7.7
>SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein
L9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 189
Score = 202 bits (493), Expect = 3e-53
Identities = 99/178 (55%), Positives = 129/178 (72%)
Frame = +3
Query: 30 KQIVANQKVKIPESLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRQLKVEKWFGS 209
+ I ++ + IPE ++V +K+RLVTVKGPRGVLK+N + + ++++ +K W GS
Sbjct: 3 RDIYKDETLTIPEGVSVDIKARLVTVKGPRGVLKQNLRRVDIELKKQG-NTIKFIVWHGS 61
Query: 210 KKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNTIIEIRNFLGEKYI 389
+K A +RT S + NMI GVT+GF+YKMR VYAHFPIN TE T++EIRNFLGE+
Sbjct: 62 RKHNACIRTAYSIINNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERIT 121
Query: 390 RRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYV 563
R +K PGVTV S KDE+IIEGNSLE+VS SAA I+Q V+NKDIRKFLDG+YV
Sbjct: 122 RVIKCLPGVTVSISSAVKDEIIIEGNSLENVSQSAANIKQICNVRNKDIRKFLDGIYV 179
>SPAC4G9.16c |rpl901|rpl9-1|60S ribosomal protein
L9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 190
Score = 197 bits (481), Expect = 8e-52
Identities = 96/178 (53%), Positives = 128/178 (71%)
Frame = +3
Query: 30 KQIVANQKVKIPESLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRQLKVEKWFGS 209
+ I ++ + IP+ +TV +K+R VTV GPRG LK+N +H+ ++++ +K W GS
Sbjct: 3 RDIYKDETLTIPKGVTVDIKARNVTVTGPRGTLKQNLRHVDIEMKKQG-NTIKFIVWHGS 61
Query: 210 KKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNTIIEIRNFLGEKYI 389
+K A +R+V S + NMI GVT+GF+YKMR VYAHFPIN TE T++EIRNFLGE+
Sbjct: 62 RKHNACIRSVYSIINNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERIT 121
Query: 390 RRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYV 563
R +K PGVTV S KDE+I+EGNSLE+VS SAA I+Q V+NKDIRKFLDG+YV
Sbjct: 122 RVIKCLPGVTVSISSAVKDEIILEGNSLENVSQSAANIKQICNVRNKDIRKFLDGIYV 179
>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1462
Score = 27.5 bits (58), Expect = 1.4
Identities = 19/90 (21%), Positives = 44/90 (48%)
Frame = +3
Query: 90 SRLVTVKGPRGVLKRNFKHLAVDIRMVNPRQLKVEKWFGSKKELAAVRTVCSHVENMIKG 269
S+L + + ++ RN + L++ ++VN +E W G + +AV T + ++++ +
Sbjct: 1111 SKLCNLLNDKNIVVRN-QSLSLFHQLVNKYPFLLESWIGLQLVQSAVNTNTADIDDLYRL 1169
Query: 270 VTKGFQYKMRAVYAHFPINCVTTEGNTIIE 359
++K + + CV T TI++
Sbjct: 1170 LSKIPTNLLDLPMFQVYLGCVDTLIQTIVK 1199
>SPAC323.07c |||MatE family transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 27.5 bits (58), Expect = 1.4
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -1
Query: 55 TFWFATICFILGLCLT 8
TFWF +IC IL +C +
Sbjct: 281 TFWFQSICLILYICFS 296
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 27.1 bits (57), Expect = 1.9
Identities = 11/29 (37%), Positives = 21/29 (72%)
Frame = +3
Query: 426 NSPKQKDELIIEGNSLEDVSSSAALIQQS 512
+SPK+K +L ++G L+ + + +LI+QS
Sbjct: 249 SSPKEKYQLFMKGIQLKQLEENYSLIEQS 277
>SPAC6C3.06c |||P-type ATPase, calcium
transporting|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1033
Score = 26.2 bits (55), Expect = 3.3
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +2
Query: 437 TKG*TDHRRKLIRRCIQ-FSCPDPTINDSKEQGYQKVLGRSLC 562
T G + +++ CIQ +S P P DSK VL SLC
Sbjct: 427 TMGFSAESMDVVQACIQNYSTPIPLSEDSKTLVRNLVLALSLC 469
>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 25.4 bits (53), Expect = 5.8
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +2
Query: 236 SMLSCRKHDQRCDQGIPIQDACSVRSFPYQLCHH--*GKHNY 355
S L+CR+ +CD G P + C RS Q C + GK NY
Sbjct: 22 SCLACRRKKLKCDHGRPCSN-CLKRS-TIQSCIYIDPGKTNY 61
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 25.4 bits (53), Expect = 5.8
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -1
Query: 223 ASSFLEPNHFSTFNWRGLTMRMSTAKCLKF 134
+SS PNH ++ RGLT ST K+
Sbjct: 278 SSSNTSPNHLASVPNRGLTSNSSTGSFTKY 307
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 25.0 bits (52), Expect = 7.7
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 475 SNEFPSMISSSFCLGELTTVTPGAIFTLLMYF 380
SN + I SFC LTT+ P ++ L+YF
Sbjct: 635 SNPSATFIDFSFC--PLTTIDPAFSYSNLVYF 664
>SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 517
Score = 25.0 bits (52), Expect = 7.7
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -1
Query: 64 GIFTFWFATICFILGLCLTL 5
G+ WFA +CF G LT+
Sbjct: 276 GVVLIWFAWLCFNSGTLLTV 295
>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 981
Score = 25.0 bits (52), Expect = 7.7
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -3
Query: 125 NSARTFHCHQTRFHMDGETLRNLH 54
+S R FH Q+ FH++G N++
Sbjct: 573 HSVRFFHAIQSHFHLEGPIRYNMN 596
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,433,275
Number of Sequences: 5004
Number of extensions: 50406
Number of successful extensions: 153
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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