Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_P04
(565 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23) 173 1e-43
SB_40010| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 2e-05
SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
SB_29064| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.6
SB_12264| Best HMM Match : Filament (HMM E-Value=0.0075) 28 4.6
SB_18582| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.6
SB_54473| Best HMM Match : DLIC (HMM E-Value=0) 28 6.1
SB_41075| Best HMM Match : RVT_1 (HMM E-Value=2.1e-30) 28 6.1
SB_28271| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-14) 27 8.0
>SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)
Length = 741
Score = 173 bits (420), Expect = 1e-43
Identities = 75/128 (58%), Positives = 102/128 (79%)
Frame = +3
Query: 27 MKQIVANQKVKIPESLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRQLKVEKWFG 206
MK I+A++ V IP+++ V VKSR+VTV GPRG LKRNF+HL +++ V +++V+ WF
Sbjct: 557 MKTILASETVTIPDNVEVKVKSRVVTVTGPRGTLKRNFRHLRLELTKVGKDKVRVDVWFA 616
Query: 207 SKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNTIIEIRNFLGEKY 386
S+KELA V+T+ +H+ENMIKGV G++YKMRAVYAHFPIN E T++E+RNFLGEKY
Sbjct: 617 SRKELACVKTIITHIENMIKGVIYGYRYKMRAVYAHFPINIAIQENGTLVEVRNFLGEKY 676
Query: 387 IRRVKMAP 410
+RRV+M P
Sbjct: 677 VRRVRMRP 684
>SB_40010| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 34
Score = 46.0 bits (104), Expect = 2e-05
Identities = 21/23 (91%), Positives = 22/23 (95%)
Frame = +3
Query: 495 ALIQQSTTVKNKDIRKFLDGLYV 563
ALIQQST VKNKDIRKFLDG+YV
Sbjct: 2 ALIQQSTKVKNKDIRKFLDGVYV 24
>SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2834
Score = 29.5 bits (63), Expect = 2.0
Identities = 30/117 (25%), Positives = 52/117 (44%), Gaps = 5/117 (4%)
Frame = +3
Query: 129 KRNFKHLAVDIRMVNPRQLKVEKWFGSKKELAAVRTVCSHVENMIKGVTKGFQY-KMRAV 305
KR H+ + +N ++ +K K+ LAA + V + N+ KGVT+G K R V
Sbjct: 924 KRKLTHV---VDGINTKKELRKKQEDMKRALAAAKVVKTERVNVAKGVTQGMPVTKGRVV 980
Query: 306 YAHFPI--NCVTTEGNTIIE-IRNFLGEKYIRRVKMAPGVTVVNS-PKQKDELIIEG 464
PI V T+G + + + G + + + PG V P + ++ +G
Sbjct: 981 TQGMPITPGRVVTQGKVVTQGMPVTPGRVVTQGIPVTPGRIVTQGIPVTQGRVVTQG 1037
>SB_29064| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 324
Score = 28.3 bits (60), Expect = 4.6
Identities = 19/49 (38%), Positives = 25/49 (51%)
Frame = -1
Query: 502 IRAAELDTSSNEFPSMISSSFCLGELTTVTPGAIFTLLMYFSPRKLRIS 356
I AAE+ TS + S S CL VT IFT MY PR++ ++
Sbjct: 232 ISAAEVKTSRIFLLVINSFSICLAPFMIVTFIEIFTGTMYTVPRQVYLA 280
>SB_12264| Best HMM Match : Filament (HMM E-Value=0.0075)
Length = 762
Score = 28.3 bits (60), Expect = 4.6
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Frame = +3
Query: 342 GNTIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQ--KDELIIEGNSLEDVSSSAALIQQST 515
G ++ +++ LG++ + T + K+EL +SLE+VS A +Q S
Sbjct: 196 GREVVRLKDELGKQASNELSFIAKTTELEDQLVLLKEELNSRVSSLENVSKQLAELQSSA 255
Query: 516 TVKNKDIRKFLDGLYV 563
K+++I L V
Sbjct: 256 LTKDEEISSLTKRLQV 271
>SB_18582| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 499
Score = 28.3 bits (60), Expect = 4.6
Identities = 13/51 (25%), Positives = 24/51 (47%)
Frame = -3
Query: 425 DNCHTRCHFYPPDVLFTKEVTDLNNCVSLSGDTVDREMSVHCTHLVLESLG 273
D + H Y D + + +L V+ S +V S+H T+++ +LG
Sbjct: 363 DRLNDTLHHYETDPKYHRLFIELTPYVNHSAPSVQENFSLHRTYIIFRTLG 413
>SB_54473| Best HMM Match : DLIC (HMM E-Value=0)
Length = 1401
Score = 27.9 bits (59), Expect = 6.1
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Frame = -1
Query: 253 ST*EHTVLTAASSFLEPN--HFSTFNWRGLTMRMSTAKCLKFRFRTPRGPFTVTKRDFTW 80
+T H L S +E + H T N+R + ++ + +K F P T T +
Sbjct: 766 TTISHDQLMKLRSIMEKDGVHKITDNYRHILQPLN-GRTVKSNFMGPTTASTTTANPNSA 824
Query: 79 TVRLSGIFTFWFATICFIL 23
+ L+ I TF+ A + FIL
Sbjct: 825 ELLLASIMTFFMAILPFIL 843
>SB_41075| Best HMM Match : RVT_1 (HMM E-Value=2.1e-30)
Length = 1152
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +3
Query: 84 VKSRLVTVKGPRGVLKRNFKHL 149
V++R TV PRG L+RN +HL
Sbjct: 1069 VETRSYTVSTPRGELRRNRRHL 1090
>SB_28271| Best HMM Match : 7tm_1 (HMM E-Value=6.2e-14)
Length = 686
Score = 27.5 bits (58), Expect = 8.0
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = -1
Query: 460 SMISSSFCLGELTTVTPGAIFTLLMYFSPRKLRISIIVFPSVVTQLIG 317
SMISS + LTT+T ++ F R+L+ + V+ +V L G
Sbjct: 83 SMISSEVSVLILTTITADRFACIVFAFKFRRLKFNTAVYIAVSIWLFG 130
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,314,692
Number of Sequences: 59808
Number of extensions: 393952
Number of successful extensions: 970
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 970
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1325051197
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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