Samia BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_P04
         (565 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    25   2.3  
AY705394-1|AAU12503.1|  557|Anopheles gambiae nicotinic acetylch...    24   3.0  
X87410-1|CAA60857.1|  498|Anopheles gambiae maltase-like protein...    24   3.9  

>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 24.6 bits (51), Expect = 2.3
 Identities = 19/98 (19%), Positives = 39/98 (39%)
 Frame = +3

Query: 210  KKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNTIIEIRNFLGEKYI 389
            + EL    T    +  M++ + K     +  +  H  +  V  +   I++IRN+LG+  +
Sbjct: 947  RDELIRYSTALRDLTQMMRDIRKSRFSHLHKLTTHMALR-VKHKFTNIMQIRNYLGKLRV 1005

Query: 390  RRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALI 503
             + +    ++VV         +    SL     S A +
Sbjct: 1006 NQEECRLSLSVVPRDANVQNAVSTTKSLSGGERSYATV 1043


>AY705394-1|AAU12503.1|  557|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 1 protein.
          Length = 557

 Score = 24.2 bits (50), Expect = 3.0
 Identities = 10/36 (27%), Positives = 16/36 (44%)
 Frame = -1

Query: 109 FTVTKRDFTWTVRLSGIFTFWFATICFILGLCLTLV 2
           F   K D+ +   +      W  TI  +LG CL ++
Sbjct: 488 FESVKEDWKYVALVLDRLFLWIFTIACVLGTCLIIL 523


>X87410-1|CAA60857.1|  498|Anopheles gambiae maltase-like protein
           Agm1 protein.
          Length = 498

 Score = 23.8 bits (49), Expect = 3.9
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -3

Query: 338 SGDTVDREMSVHCTHLVLESLGHTFDHVFDMR 243
           SG+T D +   +  H   ++L  TFD ++  R
Sbjct: 243 SGETDDPDNPTYLVHQHTQNLDETFDMMYQWR 274


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 613,145
Number of Sequences: 2352
Number of extensions: 12922
Number of successful extensions: 18
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 52983882
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)