Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_P03
         (375 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A6CPB5 Cluster: Sensor protein; n=1; Bacillus sp. SG-1|...    32   3.0  
UniRef50_Q08TH5 Cluster: Putative uncharacterized protein; n=1; ...    31   9.1  

>UniRef50_A6CPB5 Cluster: Sensor protein; n=1; Bacillus sp.
           SG-1|Rep: Sensor protein - Bacillus sp. SG-1
          Length = 412

 Score = 32.3 bits (70), Expect = 3.0
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = -2

Query: 257 NSVPNIHLSRSLREARKRFIKLWTFFFLVA*QIYYYY 147
           N + NI L R      K F+ L+ +FFL+A  ++YYY
Sbjct: 2   NQLNNIRLDREEIRTLKLFLSLF-YFFLIAYDVFYYY 37


>UniRef50_Q08TH5 Cluster: Putative uncharacterized protein; n=1;
           Stigmatella aurantiaca DW4/3-1|Rep: Putative
           uncharacterized protein - Stigmatella aurantiaca DW4/3-1
          Length = 644

 Score = 30.7 bits (66), Expect = 9.1
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 46  IGFTRHFVVHEMRVQRHRRILFLVQRPLFNH 138
           +G     +      QRHRR+L L++RPL +H
Sbjct: 222 LGLVEDLLTDLSEAQRHRRVLVLLRRPLAHH 252


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 313,462,474
Number of Sequences: 1657284
Number of extensions: 5186679
Number of successful extensions: 10240
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 9958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10236
length of database: 575,637,011
effective HSP length: 91
effective length of database: 424,824,167
effective search space used: 14019197511
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)