Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_P03
         (375 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca...    25   5.1  
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma...    24   6.8  
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    24   9.0  

>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
           cancers-1 homolog 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 676

 Score = 24.6 bits (51), Expect = 5.1
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = -2

Query: 290 IISYNYYFISNNSVPNIHLSRSLREARKRF 201
           ++S   YF+ NN   N+H+   L++ +++F
Sbjct: 499 LLSSFLYFLINNFNDNLHIIELLQKDKRKF 528


>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1000

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 242 IHLSRSLREARKRFIKL 192
           IHL R L++ R+RF K+
Sbjct: 611 IHLERCLKDLRERFAKI 627


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
           Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 6   RTICAFRGYVQTPYWIHPP 62
           R +C   GYV  PY  +PP
Sbjct: 714 RKLCGRSGYVIQPYLDYPP 732


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,368,116
Number of Sequences: 5004
Number of extensions: 24244
Number of successful extensions: 40
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)