Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_P03
         (375 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   6.3  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    21   6.3  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       20   8.3  

>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 20.6 bits (41), Expect = 6.3
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +3

Query: 48  WIHPPFCSTRDASTTSQTYFIFS 116
           W+ P +   R   T SQT  I+S
Sbjct: 344 WLDPEYPMIRVHKTQSQTIDIYS 366


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 20.6 bits (41), Expect = 6.3
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +2

Query: 269 SNSCTILYTYTYICLES 319
           +N+C+I  +YT  C+E+
Sbjct: 169 NNTCSISNSYTNGCVEA 185


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 20.2 bits (40), Expect = 8.3
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +2

Query: 284 ILYTYTYICLE 316
           I+YTYT I LE
Sbjct: 220 IIYTYTSILLE 230


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,901
Number of Sequences: 438
Number of extensions: 1839
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9052365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)