Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_P02
         (399 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    26   2.5  
SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch...    24   7.6  
SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces...    24   10.0 

>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1502

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = -2

Query: 392 FCCQSKSIFLFN*GLELLN 336
           F   S + FLFN GLELLN
Sbjct: 518 FISDSDAYFLFNHGLELLN 536


>SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1030

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -3

Query: 259 TRAQPRPHS*YILKYTKPHSNN*NSN 182
           TR Q  PH  Y+L    P S+N  SN
Sbjct: 670 TREQVAPHETYVLDVLLPISSNSMSN 695


>SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 490

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 96  YFYEENLLNIL*HYYFVVDNLLRSFKYIFTS 4
           Y+      N+L   YF  ++ LRSF Y F+S
Sbjct: 323 YYISSAFSNLLHCRYFNCNDRLRSFYYRFSS 353


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,390,201
Number of Sequences: 5004
Number of extensions: 24808
Number of successful extensions: 38
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)