Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_P02
         (399 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0773 + 5963165-5963306,5963440-5963489,5963580-5963645,596...    29   1.8  

>07_01_0773 +
           5963165-5963306,5963440-5963489,5963580-5963645,
           5964162-5964188,5965320-5965375,5966613-5966681,
           5966901-5966995,5967141-5967251,5970545-5970879,
           5971218-5971253,5971254-5971421
          Length = 384

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +1

Query: 175 VTCYYFNYYCVVLYILEYTNCVAAAAPAFLIF 270
           +T YY+    +VL+++EY+N ++   P F  F
Sbjct: 105 LTIYYWLNAWMVLFLIEYSNLMSLTFPIFFTF 136


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,703,951
Number of Sequences: 37544
Number of extensions: 119041
Number of successful extensions: 138
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)