Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_P01
(509 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom... 48 6e-07
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc... 29 0.31
SPBC1105.06 |pmc4|med4|RNA polymerase II holoenzyme component Pm... 29 0.53
SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein Ug... 27 1.2
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar... 27 2.2
SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces po... 26 3.8
SPCC4G3.08 |psk1||serine/threonine protein kinase Psk1|Schizosac... 26 3.8
SPAC9E9.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 5.0
SPBC25H2.06c |hrf1||COPII-coated vesicle component Hrf1 |Schizos... 25 6.6
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch... 25 6.6
SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase |Schizosaccharom... 25 8.7
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 25 8.7
SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces pom... 25 8.7
>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 558
Score = 48.4 bits (110), Expect = 6e-07
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Frame = +1
Query: 223 PVVMPTNNDDTRVLIPAN-QELMHNPKYEELFAPTFGPDNPFQTQQMKANRNMLAGYVEK 399
P V+ DD V N +EL N E+ P GP NPF T++ + +N + GY E+
Sbjct: 32 PAVVDNVKDDLIVSKGGNSRELARNVPVNEMVQPALGPANPFVTKEQDSIKNSITGYAER 91
Query: 400 AHISDFQF--ENQRRTFTSYG 456
++ +F F E T YG
Sbjct: 92 EYVPNFVFNQEYYANTHAIYG 112
>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 997
Score = 29.5 bits (63), Expect = 0.31
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -3
Query: 477 RRRIDCISITCKCPSLIFKLKITYMSLLNI 388
RRR DC+ T K P+ + K++++S NI
Sbjct: 185 RRRADCVFFTWKDPNSLSPTKLSFLSTSNI 214
>SPBC1105.06 |pmc4|med4|RNA polymerase II holoenzyme component Pmc4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 239
Score = 28.7 bits (61), Expect = 0.53
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Frame = +1
Query: 181 PNLSIAKSMQICSTPVVMPTNND--DTRVLIPANQELMHNPKYEELFAPTFGPDNPFQTQ 354
PNLS S P P N+ +T I AN+ + K +PTF +
Sbjct: 160 PNLSATASQLFSEQP---PKTNEPTETETEIDANKAVEEKTKMNYPASPTFTTQEENKEV 216
Query: 355 QMKANRNMLAGY 390
+ AN+++ AG+
Sbjct: 217 ESPANKDVFAGF 228
>SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein
Ugo1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 421
Score = 27.5 bits (58), Expect = 1.2
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = -2
Query: 160 STNSHYCFVLLLLNRCPHRLPNYFHSSLYLTLYC 59
S NSH F L + +C LP Y SSL L C
Sbjct: 263 SGNSHKKFKPLTIRQCLKALPFYCPSSLILPTVC 296
>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 682
Score = 26.6 bits (56), Expect = 2.2
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = -1
Query: 83 FFIFNIVLFICLQNF 39
FFIF++ F+C++NF
Sbjct: 358 FFIFSLFFFLCMRNF 372
Score = 25.4 bits (53), Expect = 5.0
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = -1
Query: 308 SSYFGLCINSWFAGISTLVSSLFVGI 231
S +F LC+ ++F G + +LF+G+
Sbjct: 362 SLFFFLCMRNFFPGFTIYFPALFLGV 387
>SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 547
Score = 25.8 bits (54), Expect = 3.8
Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = +1
Query: 214 CSTPVVMPTNNDDTRVLIPANQELMHNPKYEELFAPTFGPDNPFQ--TQQMKANRNML 381
C + ++ +++ T +L+P L H PK L+ F + Q +Q++ A N L
Sbjct: 173 CFSSNLIYKDSESTPILLPLIDSLNHKPKQPILWNSDFQDEKSVQLISQELVAKGNQL 230
>SPCC4G3.08 |psk1||serine/threonine protein kinase
Psk1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 436
Score = 25.8 bits (54), Expect = 3.8
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = -2
Query: 463 LHIHNL*MSFFDFQIENHLYEPSQHNLLTCSYWLSFVA 350
+H+H L + + D + EN L + H LLT + LS VA
Sbjct: 204 IHLHKLGIVYRDLKPENCLLDAEGHILLT-DFGLSKVA 240
>SPAC9E9.05 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 313
Score = 25.4 bits (53), Expect = 5.0
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +1
Query: 268 PANQELMHNPKYEELFAPTFGPDNPFQTQQMKANR 372
P N++L H K E+ P+ D+PF K R
Sbjct: 19 PENKKLSHRFKSVEIVPPSSSNDDPFGFSSTKGIR 53
>SPBC25H2.06c |hrf1||COPII-coated vesicle component Hrf1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 293
Score = 25.0 bits (52), Expect = 6.6
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -2
Query: 217 SKFACFLLWINLDQQVLNASTNSHYCFVLLLL 122
++ C+LL I+ QVL+ S Y FV L+L
Sbjct: 187 TRLGCYLLNISSQSQVLDLLAFSGYKFVGLIL 218
>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1108
Score = 25.0 bits (52), Expect = 6.6
Identities = 21/89 (23%), Positives = 34/89 (38%), Gaps = 6/89 (6%)
Frame = +1
Query: 52 QINNTMLNIKNYGXXXXXXXXXXXXVTKQNSNESLLMHLKPVDPNLSI------AKSMQI 213
++N+TM +KN +T +N S L H + N I KS +I
Sbjct: 652 ELNSTMEEVKNVWNSQGEILRLYLEITPENELSSSLTHQNTGEWNAFIFVKYFDRKSQEI 711
Query: 214 CSTPVVMPTNNDDTRVLIPANQELMHNPK 300
+ +D+ R + P E + PK
Sbjct: 712 SGCGTLHVNKSDEIRSICPLLCERANLPK 740
>SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 365
Score = 24.6 bits (51), Expect = 8.7
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -1
Query: 200 FAMDKFGSTGFKCINKLSLLFCFVT 126
+A+DK+ F CI+KLS + + T
Sbjct: 28 YAVDKYPDFHFTCIDKLSYVSNYTT 52
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 24.6 bits (51), Expect = 8.7
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = -2
Query: 112 PHRLPNYFHSSLYLTLYCLFVYKIF 38
P ++ +YF + YLT + L +Y +F
Sbjct: 965 PKQIWDYFSPNFYLTFWKLSLYDVF 989
>SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 592
Score = 24.6 bits (51), Expect = 8.7
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = +1
Query: 244 NDDTRVLIPANQELMHNPKYEELFAPTFGPDNPFQTQQMKANRNMLAGYVEKAHI 408
+DD + P+ + M Y E +F D+ F+ +++ +RN A VEK +
Sbjct: 28 DDDAKQNYPSKEPHMKLGDYTE--ETSFVDDSIFKREELTPDRNSPANDVEKMEV 80
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,068,337
Number of Sequences: 5004
Number of extensions: 41856
Number of successful extensions: 132
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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