Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_P01
         (509 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0256 + 15898702-15900420                                         56   1e-08
07_03_1076 + 23779941-23779988,23780102-23780191,23781580-237816...    29   2.9  
11_04_0255 - 15422536-15422640,15422734-15422790,15422917-154230...    27   8.8  
01_06_0246 + 27845898-27846001,27846235-27846237,27846472-278467...    27   8.8  

>03_03_0256 + 15898702-15900420
          Length = 572

 Score = 56.4 bits (130), Expect = 1e-08
 Identities = 29/75 (38%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
 Frame = +1

Query: 253 TRVLIPANQELMHNPKYEELFAPTFGPDNPFQT-QQMKANRNMLAGYVEKAHISDFQFEN 429
           +R L P+   +  NP  ++L+AP  GP +P         NRN   G+VE A +  F F+ 
Sbjct: 55  SRPLDPSLHLVPFNPTADQLWAPVLGPQHPHAPISSASGNRNHKLGHVEDAAVLPFLFDE 114

Query: 430 QRRTFTSYGYAIDPS 474
           Q  TF  +GYA DPS
Sbjct: 115 QYNTFHRFGYAADPS 129


>07_03_1076 +
           23779941-23779988,23780102-23780191,23781580-23781663,
           23781792-23782010,23782873-23782974,23783809-23784207,
           23784332-23784561,23784749-23784842,23784931-23785113,
           23785254-23785351,23785831-23786143
          Length = 619

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +1

Query: 142 SNESLLMHLKPVDPNLSIAKSMQICS-TPVVMPTNNDDTRV 261
           S + LLM ++P +PN    KS  +CS TP+++  N   T++
Sbjct: 400 SRKMLLMPIEPFEPN----KSCYVCSETPLLLEVNTKTTKL 436


>11_04_0255 -
           15422536-15422640,15422734-15422790,15422917-15423013,
           15423155-15423222,15423299-15423344,15423467-15423621,
           15423767-15423995,15424124-15424200,15425804-15425856,
           15426082-15426139
          Length = 314

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 388 NLLTCSYWLSFVAFETGYLDQ 326
           +L TCS W+SF  + TG L Q
Sbjct: 68  HLQTCSLWMSFGVYVTGILFQ 88


>01_06_0246 +
           27845898-27846001,27846235-27846237,27846472-27846700,
           27846814-27846968,27847091-27847136,27847233-27847324,
           27847425-27847521,27847649-27847705,27847799-27847927
          Length = 303

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 388 NLLTCSYWLSFVAFETGYLDQ 326
           +L TCS W+SF  + TG L Q
Sbjct: 41  HLQTCSLWMSFGVYVTGILFQ 61


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,298,755
Number of Sequences: 37544
Number of extensions: 225542
Number of successful extensions: 476
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 475
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)