Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_P01
(509 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_5842| Best HMM Match : WD40 (HMM E-Value=6.7e-21) 109 2e-24
SB_36148| Best HMM Match : Laminin_EGF (HMM E-Value=4.7) 31 0.42
SB_486| Best HMM Match : Toxin_3 (HMM E-Value=4.5) 31 0.55
SB_10648| Best HMM Match : 7TM-7TMR_HD (HMM E-Value=3.4) 30 0.96
SB_40284| Best HMM Match : DUF1070 (HMM E-Value=4.4) 29 1.7
SB_13004| Best HMM Match : TPR_MLP1_2 (HMM E-Value=0.34) 29 2.2
SB_21351| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_53171| Best HMM Match : SpdB (HMM E-Value=7.6) 29 2.9
SB_37366| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.82) 29 2.9
SB_193| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_13566| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.9
SB_2925| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.9
SB_812| Best HMM Match : FH2 (HMM E-Value=0) 28 3.9
SB_37182| Best HMM Match : DUF225 (HMM E-Value=1) 28 5.1
SB_12096| Best HMM Match : ig (HMM E-Value=9.4e-33) 28 5.1
SB_1947| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.8
SB_21044| Best HMM Match : Pkinase_Tyr (HMM E-Value=0) 27 6.8
SB_52733| Best HMM Match : DUF948 (HMM E-Value=0.37) 27 9.0
>SB_5842| Best HMM Match : WD40 (HMM E-Value=6.7e-21)
Length = 759
Score = 109 bits (261), Expect = 2e-24
Identities = 55/101 (54%), Positives = 68/101 (67%), Gaps = 1/101 (0%)
Frame = +1
Query: 163 HLKPVDPNLSIAKSMQICSTPVVMPTNNDDTRVLIPAN-QELMHNPKYEELFAPTFGPDN 339
HL P S+ QI PVV + + I +N +E+ NPKYEELFAP GPDN
Sbjct: 33 HLNPQASIESLKSRAQINMAPVVTHKGDIEVSRKIDSNTKEVAFNPKYEELFAPQVGPDN 92
Query: 340 PFQTQQMKANRNMLAGYVEKAHISDFQFENQRRTFTSYGYA 462
PF+T+Q +A +N LAGYVEKAH+SDF FE QRRTFTSYG++
Sbjct: 93 PFKTKQQQAAKNALAGYVEKAHMSDFAFEVQRRTFTSYGHS 133
>SB_36148| Best HMM Match : Laminin_EGF (HMM E-Value=4.7)
Length = 540
Score = 31.5 bits (68), Expect = 0.42
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = -3
Query: 489 CFSFRRRIDCISITCKCPSLIFK--LKITYMSLLNITC*HVPIGFHLLRLKRVIWTKC 322
CF R +D SITC C ++ + + + + S N+ H+ L L RV+ + C
Sbjct: 322 CFRSRAHVDVFSITCSCRCVLHRGLMSMCFPSRANVDVFHIACSC-LCVLHRVLMSMC 378
>SB_486| Best HMM Match : Toxin_3 (HMM E-Value=4.5)
Length = 334
Score = 31.1 bits (67), Expect = 0.55
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = -3
Query: 489 CFSFRRRIDCISITCKCPSLIFK--LKITYMSLLNITC*HVPIGFHLLRLKRVIWTKC 322
CF R +D SITC C ++ + + + + S N+ H+ L L RV+ + C
Sbjct: 264 CFRSRAHVDVFSITCSCRCVLHRGLMSMCFPSRANVGVFHIACSC-LCVLHRVLMSMC 320
>SB_10648| Best HMM Match : 7TM-7TMR_HD (HMM E-Value=3.4)
Length = 272
Score = 30.3 bits (65), Expect = 0.96
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Frame = -3
Query: 483 SFRRRIDCISITCKCPSLIFKLKITY-MSLLNITC-*HVPIGFHLLRLK-RVIWTKCRC 316
S+R R+ IS++C C +I L Y +S+++++C H+ I R + VI + C C
Sbjct: 158 SYRYRVSVISLSCICHIVIVYLSYRYRVSVISLSCICHIVIVHPSYRYRASVILSSCIC 216
Score = 28.3 bits (60), Expect = 3.9
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Frame = -3
Query: 483 SFRRRIDCISITCKCPSLIFKLKITY-MSLLNITC-*HVPIGFHLLRLK-RVIWTKCRC 316
S+R R IS +C C +I L Y +S+++++C H+ I + R + VI C C
Sbjct: 136 SYRHRASVISSSCICHIVIVHLSYRYRVSVISLSCICHIVIVYLSYRYRVSVISLSCIC 194
>SB_40284| Best HMM Match : DUF1070 (HMM E-Value=4.4)
Length = 124
Score = 29.5 bits (63), Expect = 1.7
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = -1
Query: 317 ANSSSYFGLCINSWFAGISTLVSSLFVGIT 228
AN S + L +NS F IST+V +F+GIT
Sbjct: 34 ANLSVFIDLSVNS-FNNISTIVCYIFIGIT 62
>SB_13004| Best HMM Match : TPR_MLP1_2 (HMM E-Value=0.34)
Length = 636
Score = 29.1 bits (62), Expect = 2.2
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
Frame = +1
Query: 175 VDPNLSIAKSMQICSTPVVMPTNNDDTRVLIPANQELMHNP-----KYEELFAPTFGPDN 339
V P+++ S Q S+ PTN D T+V+ P+N + P E F P N
Sbjct: 498 VPPSVASTSSPQSASSMSQNPTNIDPTQVVPPSNTTQVVPPPNITHPSNEPFIPQASNFN 557
Query: 340 PFQTQQMKANRNMLAG 387
+ T+ K N + +G
Sbjct: 558 SYSTRLPKLNLPVFSG 573
>SB_21351| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 558
Score = 29.1 bits (62), Expect = 2.2
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
Frame = +1
Query: 175 VDPNLSIAKSMQICSTPVVMPTNNDDTRVLIPANQELMHNP-----KYEELFAPTFGPDN 339
V P+++ S Q S+ PTN D T+V+ P+N + P E F P N
Sbjct: 114 VPPSVASTSSPQSASSMSQNPTNIDPTQVVPPSNTTQVVPPPNITHPSNEPFIPQASNFN 173
Query: 340 PFQTQQMKANRNMLAG 387
+ T+ K N + +G
Sbjct: 174 SYSTRLPKLNLPVFSG 189
>SB_53171| Best HMM Match : SpdB (HMM E-Value=7.6)
Length = 414
Score = 28.7 bits (61), Expect = 2.9
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +1
Query: 379 LAGYVEKAHISDFQFENQRRTFTSYGYAIDPSTETETGSGDA 504
+AGY + + QF RRT ++G A P T G G++
Sbjct: 61 VAGYAQILQLRRDQFVRARRTTQTFGNADVPRTAIRMGGGES 102
>SB_37366| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.82)
Length = 705
Score = 28.7 bits (61), Expect = 2.9
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
Frame = +1
Query: 175 VDPNLSIAKSMQICSTPVVMPTNNDDTRVLIPANQELMHNP-----KYEELFAPTFGPDN 339
V P+++ S Q S+ PTN D T+V+ P+N + P + F P N
Sbjct: 157 VPPSVASTSSPQSASSMSQNPTNIDPTQVVPPSNTTQVFPPPNITHPNNQPFIPQASNFN 216
Query: 340 PFQTQQMKANRNMLAG 387
+ T+ K N + +G
Sbjct: 217 SYSTRLPKLNLPVFSG 232
>SB_193| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1816
Score = 28.7 bits (61), Expect = 2.9
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
Frame = +1
Query: 175 VDPNLSIAKSMQICSTPVVMPTNNDDTRVLIPANQELMHNP-----KYEELFAPTFGPDN 339
V P ++ S Q S+ PTN D T+VL P+N + P E F P N
Sbjct: 447 VPPPVAPTSSPQSASSMSQNPTNIDPTQVLPPSNTTQVVPPPNITHPSNEPFIPQASNFN 506
Query: 340 PFQTQQMKANRNMLAG 387
+ T+ K N + +G
Sbjct: 507 SYSTRLPKLNLPVFSG 522
>SB_13566| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1008
Score = 28.3 bits (60), Expect = 3.9
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
Frame = +1
Query: 175 VDPNLSIAKSMQICSTPVVMPTNNDDTRVLIPANQELMHNP-----KYEELFAPTFGPDN 339
V P+++ S Q S+ PTN D T+V+ P+N + P + F P N
Sbjct: 114 VPPSVASTSSPQSASSMSQNPTNIDPTQVVPPSNTTQVVPPPNITHPSNQPFIPQASNFN 173
Query: 340 PFQTQQMKANRNMLAG 387
+ T+ K N + +G
Sbjct: 174 SYSTRLPKVNLPVFSG 189
>SB_2925| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 176
Score = 28.3 bits (60), Expect = 3.9
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 229 VMPTNNDDTRVLIPANQELMHNPKY 303
++PTNND LIP N +L+ +Y
Sbjct: 97 LIPTNNDAEMALIPTNNDLVFVSRY 121
>SB_812| Best HMM Match : FH2 (HMM E-Value=0)
Length = 1430
Score = 28.3 bits (60), Expect = 3.9
Identities = 14/34 (41%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Frame = -1
Query: 227 TGVEQICMLFAMDKFGSTGFK-CINKLSLLFCFV 129
TG EQ+C++FA + G +GF+ C +++S +F V
Sbjct: 1177 TGHEQVCLVFA--RVGQSGFRPCHDQVSQVFARV 1208
>SB_37182| Best HMM Match : DUF225 (HMM E-Value=1)
Length = 1282
Score = 27.9 bits (59), Expect = 5.1
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -3
Query: 489 CFSFRRRIDCISITCKCPSLIFKLKITYMSLLNITC*HVPI 367
CF R +D ITC C + ++ MS+ + +C HV +
Sbjct: 773 CFPSRAHVDVFPITCSCRCVPHRV---LMSMCSPSCAHVDV 810
>SB_12096| Best HMM Match : ig (HMM E-Value=9.4e-33)
Length = 942
Score = 27.9 bits (59), Expect = 5.1
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -2
Query: 100 PNYFHSSLYLTLYCLFVYKIFKTSTK 23
P Y + LY+T YC+++ K+ K K
Sbjct: 229 PRYLLNDLYVTDYCVWIQKVSKKKLK 254
>SB_1947| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 309
Score = 27.5 bits (58), Expect = 6.8
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 145 NESLLMHLKPVDPNLSIAKSMQICSTPVVMPTNN 246
NES +H+K + NL + + Q S+P P N+
Sbjct: 116 NESFRLHIKQIYTNLELITTKQHSSSPSRKPLNS 149
>SB_21044| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
Length = 1507
Score = 27.5 bits (58), Expect = 6.8
Identities = 17/65 (26%), Positives = 27/65 (41%)
Frame = +1
Query: 133 KQNSNESLLMHLKPVDPNLSIAKSMQICSTPVVMPTNNDDTRVLIPANQELMHNPKYEEL 312
K S +S L L P P S + PV P + + + E+ NP YEE+
Sbjct: 136 KSPSTQSTLASLAPNPPQTSALEDDHY-EKPVEKPLSGYSEPIDSLVSNEIFRNPVYEEV 194
Query: 313 FAPTF 327
++ +
Sbjct: 195 YSEPY 199
>SB_52733| Best HMM Match : DUF948 (HMM E-Value=0.37)
Length = 1147
Score = 27.1 bits (57), Expect = 9.0
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +1
Query: 340 PFQTQQMKANRNMLAGYVEKAHISDFQFENQRRTFTSYGYAIDPSTE 480
P ++K RN L G+V A D +FEN + ++ A+ S++
Sbjct: 492 PAHIARIKFYRNKLYGHVNNAAFDDVEFENYWKEISTALIALGISSD 538
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,838,281
Number of Sequences: 59808
Number of extensions: 292833
Number of successful extensions: 763
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1123894172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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