Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_P01
         (509 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039711-10|AAB96707.2|  567|Caenorhabditis elegans Yeast prp (s...    79   2e-15
AC024817-5|ABQ13054.1|  274|Caenorhabditis elegans Hypothetical ...    39   0.002
U41264-9|AAA82429.3|  240|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z72502-15|CAN86590.1|  540|Caenorhabditis elegans Hypothetical p...    28   3.4  
Z72502-14|CAA96584.2|  536|Caenorhabditis elegans Hypothetical p...    28   3.4  
AL117204-20|CAB55136.2|  699|Caenorhabditis elegans Hypothetical...    28   4.5  
AJ243905-1|CAB64866.1|  699|Caenorhabditis elegans SF1 protein p...    28   4.5  
U41015-1|AAA82317.2| 1396|Caenorhabditis elegans Multidrug resis...    27   7.9  

>AF039711-10|AAB96707.2|  567|Caenorhabditis elegans Yeast prp
           (splicing factor) relatedprotein 17 protein.
          Length = 567

 Score = 78.6 bits (185), Expect = 2e-15
 Identities = 31/77 (40%), Positives = 53/77 (68%)
 Frame = +1

Query: 259 VLIPANQELMHNPKYEELFAPTFGPDNPFQTQQMKANRNMLAGYVEKAHISDFQFENQRR 438
           ++ P  +E+  NPK+++LF P  GP N F+++Q ++ +N L G+VE AH+++F F  Q R
Sbjct: 54  IVDPKTKEIKSNPKFDQLFKPESGPVNHFKSEQQRSQKNTLTGFVEPAHLNEFHFNRQIR 113

Query: 439 TFTSYGYAIDPSTETET 489
           +F + GYA +P+ E+ T
Sbjct: 114 SFDTLGYAQNPTAESGT 130


>AC024817-5|ABQ13054.1|  274|Caenorhabditis elegans Hypothetical
           protein Y54G2A.12 protein.
          Length = 274

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 18/48 (37%), Positives = 29/48 (60%)
 Frame = +1

Query: 259 VLIPANQELMHNPKYEELFAPTFGPDNPFQTQQMKANRNMLAGYVEKA 402
           ++ P  +E+  NPK+++LF P  GP N F+++Q    R    G V+KA
Sbjct: 52  IVDPKTKEIKSNPKFDQLFKPESGPVNHFKSEQFGTTR--FVGDVKKA 97


>U41264-9|AAA82429.3|  240|Caenorhabditis elegans Hypothetical
           protein F10E7.2 protein.
          Length = 240

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 18/59 (30%), Positives = 29/59 (49%)
 Frame = -2

Query: 190 INLDQQVLNASTNSHYCFVLLLLNRCPHRLPNYFHSSLYLTLYCLFVYKIFKTSTKLPN 14
           +N++  V+ A  N      +  L+R P        S+++LT YCL +  I K S +L N
Sbjct: 168 VNVESVVIKAQYNFKCSHSISSLSRSPSIFVPV--STVFLTTYCLCLTLILKRSIRLSN 224


>Z72502-15|CAN86590.1|  540|Caenorhabditis elegans Hypothetical
           protein C08B6.1b protein.
          Length = 540

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 19/42 (45%), Positives = 24/42 (57%)
 Frame = -3

Query: 147 ITVLFCYF*IAVLIVFRTTSIVLYI*HCIVYLFTKFSKQVPN 22
           I V+ C+  I V +VF    IVLY+  CI    T FSK+V N
Sbjct: 503 ILVVVCFLIITV-VVF----IVLYVFQCIKICSTIFSKKVKN 539


>Z72502-14|CAA96584.2|  536|Caenorhabditis elegans Hypothetical
           protein C08B6.1a protein.
          Length = 536

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 19/42 (45%), Positives = 24/42 (57%)
 Frame = -3

Query: 147 ITVLFCYF*IAVLIVFRTTSIVLYI*HCIVYLFTKFSKQVPN 22
           I V+ C+  I V +VF    IVLY+  CI    T FSK+V N
Sbjct: 499 ILVVVCFLIITV-VVF----IVLYVFQCIKICSTIFSKKVKN 535


>AL117204-20|CAB55136.2|  699|Caenorhabditis elegans Hypothetical
           protein Y116A8C.32 protein.
          Length = 699

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 325 FGPDNPFQTQQMKANRNMLAGYVEKAHISDFQFENQ 432
           FGP    + QQ +AN +M  GY +  H   + + NQ
Sbjct: 566 FGPPKGEEEQQQQANASMQHGYYD--HYQQYAYPNQ 599


>AJ243905-1|CAB64866.1|  699|Caenorhabditis elegans SF1 protein
           protein.
          Length = 699

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 325 FGPDNPFQTQQMKANRNMLAGYVEKAHISDFQFENQ 432
           FGP    + QQ +AN +M  GY +  H   + + NQ
Sbjct: 566 FGPPKGEEEQQQQANASMQHGYYD--HYQQYAYPNQ 599


>U41015-1|AAA82317.2| 1396|Caenorhabditis elegans Multidrug resistance
            protein familyprotein 6 protein.
          Length = 1396

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
 Frame = -1

Query: 326  NVGANSSSYFGLCIN---SWFAGISTLVSSL-FVGITTGVEQICMLFAMDKFG 180
            N+G  S+ +FG+CI+   S F  I  +V  L +  +T G   +C++ A+   G
Sbjct: 1028 NMGLLSARWFGICIDFLVSVFVSIVAIVVVLQYETLTVGEVGLCLVCAVQLSG 1080


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,332,993
Number of Sequences: 27780
Number of extensions: 228837
Number of successful extensions: 736
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 988489374
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)