Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_O24
(415 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5... 53 2e-08
SPBC15D4.14 |taf73||TATA-binding protein associated factor |Schi... 43 2e-05
SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|... 29 0.38
SPBC17D11.07c |rpn2||19S proteasome regulatory subunit Rpn2|Schi... 27 1.5
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 27 1.5
SPAC688.02c |mis14||kinetochore protein Mis14 |Schizosaccharomyc... 26 2.7
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb... 26 2.7
SPCC188.02 |par1||protein phosphatase regulatory subunit Par1 |S... 26 2.7
SPBC16C6.12c |||Las1-like protein|Schizosaccharomyces pombe|chr ... 26 2.7
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|... 25 6.1
SPAC9G1.04 |oxa101|oxa1, oxa1-1, oxa1sp1|mitochondrial inner mem... 25 6.1
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe... 24 8.1
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb... 24 8.1
>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
Taf72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 643
Score = 52.8 bits (121), Expect = 2e-08
Identities = 35/92 (38%), Positives = 49/92 (53%)
Frame = +3
Query: 132 VLQLLRKYNLKGTEEILRKEASLGDVEYENLNLPEVELASILTAHHTESDPYSYEFAYDN 311
VL L K TE +LR EAS V E +L SI E P +Y Y
Sbjct: 16 VLDYLAKKGYSRTEAMLRLEASGSGVSVEE------KLKSI------EETPDAYTHTYTI 63
Query: 312 LKKFIENSLDIYKHELSTLLYPVFVHMYLILI 407
L+ ++++SL++YK EL +L+P+FVH YL L+
Sbjct: 64 LRDWVDSSLELYKAELHRILFPIFVHSYLNLL 95
>SPBC15D4.14 |taf73||TATA-binding protein associated factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 42.7 bits (96), Expect = 2e-05
Identities = 18/40 (45%), Positives = 28/40 (70%)
Frame = +3
Query: 288 SYEFAYDNLKKFIENSLDIYKHELSTLLYPVFVHMYLILI 407
+Y Y L+ +I+ +LD+YK +L +LYP+FVH YL L+
Sbjct: 59 TYVQVYILLRDWIDGTLDLYKPKLQKVLYPIFVHSYLDLL 98
>SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 28.7 bits (61), Expect = 0.38
Identities = 15/60 (25%), Positives = 31/60 (51%)
Frame = +3
Query: 81 CKKLVFAMSEKSTPLLAVLQLLRKYNLKGTEEILRKEASLGDVEYENLNLPEVELASILT 260
C ++ +++K L+ + + + NL G I E +G + Y+NLNL + ++I +
Sbjct: 75 CSRVRKFLTDKHLMLMTLATGISRLNLSGCTRI--SEPLIGKLLYQNLNLVTINFSNIFS 132
>SPBC17D11.07c |rpn2||19S proteasome regulatory subunit
Rpn2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 965
Score = 26.6 bits (56), Expect = 1.5
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Frame = +3
Query: 204 DVEYENLNLPEVELASILTA---HHTESDPYSYEFAYDNLKKFIENSLDIYKHELSTLLY 374
+V YE+ + PE ELA+++ + ++ + FA + KF+ + YK L
Sbjct: 56 EVMYEDHSFPERELAALVVSKVYYYLGEYDEALLFALSSGPKFLHDKNSDYKETLIFKCI 115
Query: 375 PVFVH 389
+F+H
Sbjct: 116 DMFIH 120
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 26.6 bits (56), Expect = 1.5
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Frame = +3
Query: 171 EEILRKE-ASLGDVEYENLNLPE--VELA-SILTAHHTESDPYSYEFAYDNLKKFIENSL 338
E++LR SL D N L E VEL S T H +D S +++ K ++ S+
Sbjct: 349 EKLLRNTIGSLKDSRTSNSQLEEEMVELKESNRTIHSQLTDAESKLSSFEQENKSLKGSI 408
Query: 339 DIYKHELST 365
D Y++ LS+
Sbjct: 409 DEYQNNLSS 417
>SPAC688.02c |mis14||kinetochore protein Mis14 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 210
Score = 25.8 bits (54), Expect = 2.7
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Frame = +3
Query: 234 EVELASILTAHHTESDPYSYEFAY-DNLKK---FIENSLDIY 347
EVE A +L A + +S P YE AY D +++ F+ N D Y
Sbjct: 116 EVEDAHVLVARYRKSVPAQYEKAYVDAMEQQTAFLRNVKDDY 157
>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1647
Score = 25.8 bits (54), Expect = 2.7
Identities = 13/56 (23%), Positives = 25/56 (44%)
Frame = +3
Query: 204 DVEYENLNLPEVELASILTAHHTESDPYSYEFAYDNLKKFIENSLDIYKHELSTLL 371
D Y N + E+ + + HH D ++ + Y + F+ + +D + S LL
Sbjct: 1454 DALYTNGSCWELSVIILNFLHHVSPDISTHLYKYYLRRNFVSSFIDAFSRAFSELL 1509
>SPCC188.02 |par1||protein phosphatase regulatory subunit Par1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 548
Score = 25.8 bits (54), Expect = 2.7
Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = +3
Query: 210 EYENLNLPEVELASILTAHHTES-DPYSYEFAYDNLKKFIENSLDIYKHELSTLLYPVFV 386
++ +L L ++E ++ + S D Y E + L+ I+ + + K + LYP V
Sbjct: 117 KWHSLALEKLEQCCVVFDFNDPSTDLYGKEVKREALQDLID-LISVRKEAIDESLYPSIV 175
Query: 387 HMYLI 401
HM+ +
Sbjct: 176 HMFAV 180
>SPBC16C6.12c |||Las1-like protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 470
Score = 25.8 bits (54), Expect = 2.7
Identities = 20/68 (29%), Positives = 30/68 (44%)
Frame = +3
Query: 180 LRKEASLGDVEYENLNLPEVELASILTAHHTESDPYSYEFAYDNLKKFIENSLDIYKHEL 359
L +EA G L++ + +LAS+L SDP++ K I + L I EL
Sbjct: 341 LMREAYTGQPWTSTLSVTQTDLASVLEICLQRSDPFT---------KIIIDELSILDKEL 391
Query: 360 STLLYPVF 383
P+F
Sbjct: 392 ENKFSPLF 399
>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 574
Score = 24.6 bits (51), Expect = 6.1
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -1
Query: 259 VSMLANSTSGKFKFSYSTSPKLASFRSISSVPF 161
VS + K SY TSP ++ SI SVP+
Sbjct: 423 VSRIVYYMFSKTSASYVTSPLTLAYASIYSVPY 455
>SPAC9G1.04 |oxa101|oxa1, oxa1-1, oxa1sp1|mitochondrial inner
membrane translocase Oxa101|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 374
Score = 24.6 bits (51), Expect = 6.1
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = +1
Query: 226 IYRRSNWLAYSLLTTLKVIHIATNLLMTT*KNSLKILWTYTSMSYQLFCIR 378
+Y + W +LTTL V T +++ + +NS K+ M +L I+
Sbjct: 80 VYAGAPWWVSIILTTLGVRLALTPVMIASFRNSTKLSVIQPEMKKELEAIK 130
>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 959
Score = 24.2 bits (50), Expect = 8.1
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +3
Query: 255 LTAHHTESDPYSYEFAYDNLKKFIENSLDIYKHELSTLLYPVFVHM 392
L H ++ D Y Y A K + + L+ + TL+YP+ +H+
Sbjct: 324 LINHLSDEDRYLYRAA-----KRVTSKLEKVSKQNPTLVYPIAIHL 364
>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 224
Score = 24.2 bits (50), Expect = 8.1
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = -1
Query: 394 YMCTNTGYKRVDNSCLYMSKEFSMNF 317
Y C NTGYK C ++ F ++
Sbjct: 144 YKCHNTGYKDSGRPCGRCARRFGRSY 169
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,719,473
Number of Sequences: 5004
Number of extensions: 33380
Number of successful extensions: 120
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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