Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_O24
(415 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0940 + 26145746-26145879,26146740-26146821,26147349-261474... 51 4e-07
07_01_0745 + 5691926-5692095,5692654-5692735,5693256-5693334,569... 46 2e-05
03_06_0267 - 32751431-32751489,32751600-32751645,32751886-327519... 29 1.1
06_03_0245 + 18654103-18654428,18654507-18654677,18654760-18654874 27 4.5
02_01_0471 - 3364215-3364912,3365511-3365742,3365827-3366198,336... 27 5.9
06_03_0269 - 18991203-18991307,18991448-18991525,18992724-189929... 27 7.8
>06_03_0940 +
26145746-26145879,26146740-26146821,26147349-26147427,
26147527-26147624,26148392-26148479,26148589-26148686,
26148881-26148982,26149237-26149281,26150535-26150574,
26150988-26151074,26151254-26151330,26151746-26151808,
26152650-26152766,26152905-26153116,26153690-26153785,
26153869-26153935,26154028-26154081
Length = 512
Score = 50.8 bits (116), Expect = 4e-07
Identities = 24/64 (37%), Positives = 35/64 (54%)
Frame = +3
Query: 216 ENLNLPEVELASILTAHHTESDPYSYEFAYDNLKKFIENSLDIYKHELSTLLYPVFVHMY 395
E N S + +E+DP Y Y L+ + +SLD YKHEL +LYPVF+H +
Sbjct: 28 EERNRISTSSVSDVALARSENDPARYYDGYSKLRTWAYSSLDQYKHELLRVLYPVFIHSF 87
Query: 396 LILI 407
+ L+
Sbjct: 88 MDLV 91
>07_01_0745 +
5691926-5692095,5692654-5692735,5693256-5693334,
5693452-5693543,5693895-5693982,5694099-5694208,
5694399-5694515,5694883-5695034,5699134-5699229,
5699308-5699383,5699481-5699534
Length = 371
Score = 45.6 bits (103), Expect = 2e-05
Identities = 19/46 (41%), Positives = 29/46 (63%)
Frame = +3
Query: 270 TESDPYSYEFAYDNLKKFIENSLDIYKHELSTLLYPVFVHMYLILI 407
+E+DP Y Y L+ + + LD YKHEL +LYP+F H ++ L+
Sbjct: 58 SENDPARYYDGYSKLRTWAYSYLDHYKHELLRILYPLFFHCFMDLV 103
>03_06_0267 -
32751431-32751489,32751600-32751645,32751886-32751960,
32752045-32752114,32752288-32752386,32752505-32752641,
32753040-32753221,32753314-32753482,32753824-32753856,
32753958-32754068,32754184-32754295,32755592-32755727,
32756264-32756291
Length = 418
Score = 29.5 bits (63), Expect = 1.1
Identities = 18/68 (26%), Positives = 35/68 (51%)
Frame = +3
Query: 81 CKKLVFAMSEKSTPLLAVLQLLRKYNLKGTEEILRKEASLGDVEYENLNLPEVELASILT 260
C L+F S V+ L+++ G +++ + E ++ + N+ E+ELA + +
Sbjct: 98 CPHLLFYGPSGSGKKTLVMALIKQMFGAGADKV-KMENKTWKIDTGSRNI-EIELAMLSS 155
Query: 261 AHHTESDP 284
AHH E +P
Sbjct: 156 AHHVEMNP 163
>06_03_0245 + 18654103-18654428,18654507-18654677,18654760-18654874
Length = 203
Score = 27.5 bits (58), Expect = 4.5
Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 8/105 (7%)
Frame = +3
Query: 87 KLVFAMSEKSTPLLAVLQLLRKYNLKGTEEILRKEASLGDVEYENLNLPEVEL--ASILT 260
KLV A +EK L L Y+L+ + L K SL ++ N PEV ++T
Sbjct: 73 KLVPA-AEKDIAWLTFKDLFDLYSLRAVDTSLLKCYSLLSWQWCQKNAPEVAFLDPQVVT 131
Query: 261 AHHTESDPYS-YEFAYDNL-----KKFIENSLDIYKHELSTLLYP 377
+ ++D + YD L KK+I + + Y H + ++ P
Sbjct: 132 VTNLQNDRQGMVNYIYDTLWSRRDKKYIMCAYNQYAHWILLVITP 176
>02_01_0471 - 3364215-3364912,3365511-3365742,3365827-3366198,
3366324-3366449,3367056-3367262,3367399-3367492,
3367575-3367621,3367705-3368157,3368261-3368560,
3368656-3369114,3369189-3369410,3369659-3369890,
3370051-3370422,3371210-3371322,3371682-3371903,
3371977-3372180,3372308-3372572,3373123-3373311,
3373441-3373768,3373843-3374248,3374339-3374648,
3375677-3375837,3376825-3376998,3377265-3377609,
3377713-3377754,3378585-3378734,3378847-3379002,
3379088-3379540,3379651-3379966,3380402-3380839,
3381475-3381697,3383538-3383852,3384033-3384095,
3384699-3384903,3385362-3385425,3386014-3386204
Length = 3048
Score = 27.1 bits (57), Expect = 5.9
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = -1
Query: 211 STSPKLASFRSISSVPFKLYLRSNC 137
S SP+L +F+++SS+ + L + NC
Sbjct: 1313 SVSPQLLNFKTLSSLKYMLNVLKNC 1337
>06_03_0269 -
18991203-18991307,18991448-18991525,18992724-18992910,
18993096-18993265,18994228-18994306,18995006-18995220,
18995346-18995429,18995732-18995734
Length = 306
Score = 26.6 bits (56), Expect = 7.8
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = -1
Query: 244 NSTSGKFKFSYSTSPKLASFRSISSVPFKLYLRSNCNTAKR 122
+ ++GK+K+ Y+T P LA +S F L+ ++ R
Sbjct: 8 SQSNGKYKYDYATIPFLAELFKLSFSSFFLWKECQSSSPPR 48
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,992,702
Number of Sequences: 37544
Number of extensions: 172982
Number of successful extensions: 376
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 376
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 742607976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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