Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_O24
(415 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X95525-1|CAA64777.1| 799|Homo sapiens hTAFII100 protein. 64 2e-10
U80191-1|AAC51215.1| 800|Homo sapiens TFIID subunit TAFII100 pr... 64 2e-10
U75309-1|AAC50902.1| 801|Homo sapiens TBP-associated factor pro... 64 2e-10
BC052268-1|AAH52268.2| 800|Homo sapiens TAF5 RNA polymerase II,... 64 2e-10
AL591408-4|CAI16747.1| 800|Homo sapiens TAF5 RNA polymerase II,... 64 2e-10
AK223615-1|BAD97335.1| 803|Homo sapiens Transcription initiatio... 64 2e-10
BC041094-1|AAH41094.1| 325|Homo sapiens TAF5L protein protein. 46 4e-05
AL121990-8|CAI22016.1| 325|Homo sapiens TAF5-like RNA polymeras... 46 4e-05
AL121990-7|CAI22015.1| 589|Homo sapiens TAF5-like RNA polymeras... 46 4e-05
AF069736-1|AAC39906.1| 589|Homo sapiens PCAF associated factor ... 46 4e-05
AY254380-1|AAP13073.1| 2612|Homo sapiens E3 ligase for inhibin r... 37 0.023
AB032957-1|BAA86445.2| 2168|Homo sapiens KIAA1131 protein protein. 31 2.0
AB012305-1|BAA32794.1| 264|Homo sapiens d-HSCDK2 protein. 31 2.0
BC000559-1|AAH00559.1| 842|Homo sapiens ATP-binding cassette, s... 29 8.1
AK057026-1|BAB71347.1| 766|Homo sapiens protein ( Homo sapiens ... 29 8.1
AJ289233-1|CAB95766.2| 842|Homo sapiens ABC transporter umat pr... 29 8.1
AF308472-1|AAG33617.1| 896|Homo sapiens ATP-binding cassette ha... 29 8.1
AF076775-1|AAF75107.1| 842|Homo sapiens MT-ABC transporter prot... 29 8.1
AF070598-1|AAC28653.1| 511|Homo sapiens ABC transporter protein. 29 8.1
AB039371-1|BAA96733.1| 842|Homo sapiens mitochondrial ABC trans... 29 8.1
>X95525-1|CAA64777.1| 799|Homo sapiens hTAFII100 protein.
Length = 799
Score = 64.1 bits (149), Expect = 2e-10
Identities = 28/56 (50%), Positives = 41/56 (73%)
Frame = +3
Query: 240 ELASILTAHHTESDPYSYEFAYDNLKKFIENSLDIYKHELSTLLYPVFVHMYLILI 407
+++++L+A++ + DP YE Y LK FIE SLD ++ ELS L YP+FVHMYL L+
Sbjct: 197 DVSAVLSAYNQQGDPTMYEEYYSGLKHFIECSLDCHRAELSQLFYPLFVHMYLELV 252
Score = 32.3 bits (70), Expect = 0.66
Identities = 16/26 (61%), Positives = 19/26 (73%)
Frame = +3
Query: 123 LLAVLQLLRKYNLKGTEEILRKEASL 200
LLAVLQ LR+ L+ EE LR+EA L
Sbjct: 97 LLAVLQFLRQSKLREAEEALRREAGL 122
>U80191-1|AAC51215.1| 800|Homo sapiens TFIID subunit TAFII100
protein.
Length = 800
Score = 64.1 bits (149), Expect = 2e-10
Identities = 28/56 (50%), Positives = 41/56 (73%)
Frame = +3
Query: 240 ELASILTAHHTESDPYSYEFAYDNLKKFIENSLDIYKHELSTLLYPVFVHMYLILI 407
+++++L+A++ + DP YE Y LK FIE SLD ++ ELS L YP+FVHMYL L+
Sbjct: 197 DVSAVLSAYNQQGDPTMYEEYYSGLKHFIECSLDCHRAELSQLFYPLFVHMYLELV 252
Score = 32.3 bits (70), Expect = 0.66
Identities = 16/26 (61%), Positives = 19/26 (73%)
Frame = +3
Query: 123 LLAVLQLLRKYNLKGTEEILRKEASL 200
LLAVLQ LR+ L+ EE LR+EA L
Sbjct: 97 LLAVLQFLRQSKLREAEEALRREAGL 122
>U75309-1|AAC50902.1| 801|Homo sapiens TBP-associated factor
protein.
Length = 801
Score = 64.1 bits (149), Expect = 2e-10
Identities = 28/56 (50%), Positives = 41/56 (73%)
Frame = +3
Query: 240 ELASILTAHHTESDPYSYEFAYDNLKKFIENSLDIYKHELSTLLYPVFVHMYLILI 407
+++++L+A++ + DP YE Y LK FIE SLD ++ ELS L YP+FVHMYL L+
Sbjct: 198 DVSAVLSAYNQQGDPTMYEEYYSGLKHFIECSLDCHRAELSQLFYPLFVHMYLELV 253
Score = 32.3 bits (70), Expect = 0.66
Identities = 16/26 (61%), Positives = 19/26 (73%)
Frame = +3
Query: 123 LLAVLQLLRKYNLKGTEEILRKEASL 200
LLAVLQ LR+ L+ EE LR+EA L
Sbjct: 98 LLAVLQFLRQSKLREAEEALRREAGL 123
>BC052268-1|AAH52268.2| 800|Homo sapiens TAF5 RNA polymerase II,
TATA box binding protein (TBP)-associated factor, 100kD
protein.
Length = 800
Score = 64.1 bits (149), Expect = 2e-10
Identities = 28/56 (50%), Positives = 41/56 (73%)
Frame = +3
Query: 240 ELASILTAHHTESDPYSYEFAYDNLKKFIENSLDIYKHELSTLLYPVFVHMYLILI 407
+++++L+A++ + DP YE Y LK FIE SLD ++ ELS L YP+FVHMYL L+
Sbjct: 197 DVSAVLSAYNQQGDPTMYEEYYSGLKHFIECSLDCHRAELSQLFYPLFVHMYLELV 252
Score = 32.3 bits (70), Expect = 0.66
Identities = 16/26 (61%), Positives = 19/26 (73%)
Frame = +3
Query: 123 LLAVLQLLRKYNLKGTEEILRKEASL 200
LLAVLQ LR+ L+ EE LR+EA L
Sbjct: 97 LLAVLQFLRQSKLREAEEALRREAGL 122
>AL591408-4|CAI16747.1| 800|Homo sapiens TAF5 RNA polymerase II,
TATA box binding protein (TBP)-associated factor, 100kD
protein.
Length = 800
Score = 64.1 bits (149), Expect = 2e-10
Identities = 28/56 (50%), Positives = 41/56 (73%)
Frame = +3
Query: 240 ELASILTAHHTESDPYSYEFAYDNLKKFIENSLDIYKHELSTLLYPVFVHMYLILI 407
+++++L+A++ + DP YE Y LK FIE SLD ++ ELS L YP+FVHMYL L+
Sbjct: 197 DVSAVLSAYNQQGDPTMYEEYYSGLKHFIECSLDCHRAELSQLFYPLFVHMYLELV 252
Score = 32.3 bits (70), Expect = 0.66
Identities = 16/26 (61%), Positives = 19/26 (73%)
Frame = +3
Query: 123 LLAVLQLLRKYNLKGTEEILRKEASL 200
LLAVLQ LR+ L+ EE LR+EA L
Sbjct: 97 LLAVLQFLRQSKLREAEEALRREAGL 122
>AK223615-1|BAD97335.1| 803|Homo sapiens Transcription initiation
factor TFIID subunit 5 variant protein.
Length = 803
Score = 64.1 bits (149), Expect = 2e-10
Identities = 28/56 (50%), Positives = 41/56 (73%)
Frame = +3
Query: 240 ELASILTAHHTESDPYSYEFAYDNLKKFIENSLDIYKHELSTLLYPVFVHMYLILI 407
+++++L+A++ + DP YE Y LK FIE SLD ++ ELS L YP+FVHMYL L+
Sbjct: 200 DVSAVLSAYNQQGDPTMYEEYYSGLKHFIECSLDCHRAELSQLFYPLFVHMYLELV 255
Score = 32.3 bits (70), Expect = 0.66
Identities = 16/26 (61%), Positives = 19/26 (73%)
Frame = +3
Query: 123 LLAVLQLLRKYNLKGTEEILRKEASL 200
LLAVLQ LR+ L+ EE LR+EA L
Sbjct: 100 LLAVLQFLRQSKLREAEEALRREAGL 125
>BC041094-1|AAH41094.1| 325|Homo sapiens TAF5L protein protein.
Length = 325
Score = 46.4 bits (105), Expect = 4e-05
Identities = 19/54 (35%), Positives = 36/54 (66%)
Frame = +3
Query: 246 ASILTAHHTESDPYSYEFAYDNLKKFIENSLDIYKHELSTLLYPVFVHMYLILI 407
A+I++A +++P YE + L+ F+ +S + HE+ LLYP+FV+++L L+
Sbjct: 55 ANIVSAAPCQAEPQQYEVQFGRLRNFLTDSDSQHSHEVMPLLYPLFVYLHLNLV 108
>AL121990-8|CAI22016.1| 325|Homo sapiens TAF5-like RNA polymerase
II, p300/CBP-associated factor (PCAF)-associated facto
protein.
Length = 325
Score = 46.4 bits (105), Expect = 4e-05
Identities = 19/54 (35%), Positives = 36/54 (66%)
Frame = +3
Query: 246 ASILTAHHTESDPYSYEFAYDNLKKFIENSLDIYKHELSTLLYPVFVHMYLILI 407
A+I++A +++P YE + L+ F+ +S + HE+ LLYP+FV+++L L+
Sbjct: 55 ANIVSAAPCQAEPQQYEVQFGRLRNFLTDSDSQHSHEVMPLLYPLFVYLHLNLV 108
>AL121990-7|CAI22015.1| 589|Homo sapiens TAF5-like RNA polymerase
II, p300/CBP-associated factor (PCAF)-associated facto
protein.
Length = 589
Score = 46.4 bits (105), Expect = 4e-05
Identities = 19/54 (35%), Positives = 36/54 (66%)
Frame = +3
Query: 246 ASILTAHHTESDPYSYEFAYDNLKKFIENSLDIYKHELSTLLYPVFVHMYLILI 407
A+I++A +++P YE + L+ F+ +S + HE+ LLYP+FV+++L L+
Sbjct: 55 ANIVSAAPCQAEPQQYEVQFGRLRNFLTDSDSQHSHEVMPLLYPLFVYLHLNLV 108
>AF069736-1|AAC39906.1| 589|Homo sapiens PCAF associated factor 65
beta protein.
Length = 589
Score = 46.4 bits (105), Expect = 4e-05
Identities = 19/54 (35%), Positives = 36/54 (66%)
Frame = +3
Query: 246 ASILTAHHTESDPYSYEFAYDNLKKFIENSLDIYKHELSTLLYPVFVHMYLILI 407
A+I++A +++P YE + L+ F+ +S + HE+ LLYP+FV+++L L+
Sbjct: 55 ANIVSAAPCQAEPQQYEVQFGRLRNFLTDSDSQHSHEVMPLLYPLFVYLHLNLV 108
>AY254380-1|AAP13073.1| 2612|Homo sapiens E3 ligase for inhibin
receptor protein.
Length = 2612
Score = 37.1 bits (82), Expect = 0.023
Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 6/105 (5%)
Frame = +3
Query: 72 PVFCKKL--VFAMSEKSTPLLAV----LQLLRKYNLKGTEEILRKEASLGDVEYENLNLP 233
P++ K+L VFA + + T L ++ L L+RK + E L +E DV + NLP
Sbjct: 518 PIYLKRLLPVFAQTFQQTMLPSIRKASLALIRKM-IHFCSEALLQEVCDSDVGH---NLP 573
Query: 234 EVELASILTAHHTESDPYSYEFAYDNLKKFIENSLDIYKHELSTL 368
+ + T E D + A ++ ++ DIYKH+L+ L
Sbjct: 574 TILVEITATVLDQEDDDDGHLLALQIIRDIVDKGGDIYKHQLARL 618
>AB032957-1|BAA86445.2| 2168|Homo sapiens KIAA1131 protein protein.
Length = 2168
Score = 30.7 bits (66), Expect = 2.0
Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 6/105 (5%)
Frame = +3
Query: 72 PVFCKKL--VFAMSEKSTPLLAV----LQLLRKYNLKGTEEILRKEASLGDVEYENLNLP 233
P++ K+L VFA + + T L ++ L L+RK + E L KE DV + NLP
Sbjct: 76 PIYLKRLLPVFAQTFQQTMLPSIRKASLALIRKM-IHFCSEALLKEVCDSDVGH---NLP 131
Query: 234 EVELASILTAHHTESDPYSYEFAYDNLKKFIENSLDIYKHELSTL 368
+ + T E D + A ++ ++ DI+ +L+ L
Sbjct: 132 TILVEITATVLDQEDDDDGHLLALQIIRDLVDKGGDIFLDQLARL 176
>AB012305-1|BAA32794.1| 264|Homo sapiens d-HSCDK2 protein.
Length = 264
Score = 30.7 bits (66), Expect = 2.0
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Frame = +3
Query: 90 LVFAMSEKSTPLLAVLQLLR-KYNLKGTEEILRKEASLGDVEYENLNLPEVELASILTAH 266
+V+ KST + L+ +R +G +E SL + LN P + +L
Sbjct: 17 VVYKARNKSTGQMVALKKIRLDTETEGVPSTAIREISL----LKELNHPNI--VKLLDVI 70
Query: 267 HTESDPYS-YEFAYDNLKKFIENS 335
HTE+ Y +EF + +LKKF++ S
Sbjct: 71 HTENKLYLVFEFLHQDLKKFMDAS 94
>BC000559-1|AAH00559.1| 842|Homo sapiens ATP-binding cassette,
sub-family B (MDR/TAP), member 6 protein.
Length = 842
Score = 28.7 bits (61), Expect = 8.1
Identities = 8/37 (21%), Positives = 25/37 (67%)
Frame = -3
Query: 350 LVYVQRIFNEFFQVVISKFVAIWITFSVVSSEYASQF 240
++Y FN +F +++ +++++T ++V +E+ ++F
Sbjct: 402 IIYFSMFFNAWFGLIVFLCMSLYLTLTIVVTEWRTKF 438
>AK057026-1|BAB71347.1| 766|Homo sapiens protein ( Homo sapiens
cDNA FLJ32464 fis, clone SKNMC1000251, highly similar to
Homo sapiens MT-ABC transporter (MTABC) mRNA. ).
Length = 766
Score = 28.7 bits (61), Expect = 8.1
Identities = 8/37 (21%), Positives = 25/37 (67%)
Frame = -3
Query: 350 LVYVQRIFNEFFQVVISKFVAIWITFSVVSSEYASQF 240
++Y FN +F +++ +++++T ++V +E+ ++F
Sbjct: 326 IIYFSMFFNAWFGLIVFLCMSLYLTLTIVVTEWRTKF 362
>AJ289233-1|CAB95766.2| 842|Homo sapiens ABC transporter umat
protein.
Length = 842
Score = 28.7 bits (61), Expect = 8.1
Identities = 8/37 (21%), Positives = 25/37 (67%)
Frame = -3
Query: 350 LVYVQRIFNEFFQVVISKFVAIWITFSVVSSEYASQF 240
++Y FN +F +++ +++++T ++V +E+ ++F
Sbjct: 402 IIYFSMFFNAWFGLIVFLCMSLYLTLTIVVTEWRTKF 438
>AF308472-1|AAG33617.1| 896|Homo sapiens ATP-binding cassette
half-transporter protein.
Length = 896
Score = 28.7 bits (61), Expect = 8.1
Identities = 8/37 (21%), Positives = 25/37 (67%)
Frame = -3
Query: 350 LVYVQRIFNEFFQVVISKFVAIWITFSVVSSEYASQF 240
++Y FN +F +++ +++++T ++V +E+ ++F
Sbjct: 456 IIYFSMFFNAWFGLIVFLCMSLYLTLTIVVTEWRTKF 492
>AF076775-1|AAF75107.1| 842|Homo sapiens MT-ABC transporter
protein.
Length = 842
Score = 28.7 bits (61), Expect = 8.1
Identities = 8/37 (21%), Positives = 25/37 (67%)
Frame = -3
Query: 350 LVYVQRIFNEFFQVVISKFVAIWITFSVVSSEYASQF 240
++Y FN +F +++ +++++T ++V +E+ ++F
Sbjct: 402 IIYFSMFFNAWFGLIVFLCMSLYLTLTIVVTEWRTKF 438
>AF070598-1|AAC28653.1| 511|Homo sapiens ABC transporter protein.
Length = 511
Score = 28.7 bits (61), Expect = 8.1
Identities = 8/37 (21%), Positives = 25/37 (67%)
Frame = -3
Query: 350 LVYVQRIFNEFFQVVISKFVAIWITFSVVSSEYASQF 240
++Y FN +F +++ +++++T ++V +E+ ++F
Sbjct: 71 IIYFSMFFNAWFGLIVFLCMSLYLTLTIVVTEWRTKF 107
>AB039371-1|BAA96733.1| 842|Homo sapiens mitochondrial ABC
transporter 3 protein.
Length = 842
Score = 28.7 bits (61), Expect = 8.1
Identities = 8/37 (21%), Positives = 25/37 (67%)
Frame = -3
Query: 350 LVYVQRIFNEFFQVVISKFVAIWITFSVVSSEYASQF 240
++Y FN +F +++ +++++T ++V +E+ ++F
Sbjct: 402 IIYFSMFFNAWFGLIVFLCMSLYLTLTIVVTEWRTKF 438
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,508,099
Number of Sequences: 237096
Number of extensions: 1031255
Number of successful extensions: 2083
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 2036
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2083
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3087725076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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