Samia BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_O24
         (415 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U06460-1|AAC46481.1|  704|Drosophila melanogaster transcription ...    55   3e-08
AY051960-1|AAK93384.1|  704|Drosophila melanogaster LD42828p pro...    55   3e-08
AE013599-1190|AAF58737.1|  704|Drosophila melanogaster CG7704-PA...    55   3e-08
AF346730-1|AAK50884.1|  942|Drosophila melanogaster cannonball p...    36   0.016
AE014296-1810|AAF50162.1|  942|Drosophila melanogaster CG6577-PA...    36   0.016
AY094707-1|AAM11060.1|  394|Drosophila melanogaster GH12838p pro...    28   5.6  
AE013599-2263|AAF58007.1|  394|Drosophila melanogaster CG6251-PA...    28   5.6  
AY058376-1|AAL13605.1|  499|Drosophila melanogaster GH14326p pro...    27   7.4  
AE013599-3349|AAF46811.1|  499|Drosophila melanogaster CG3045-PA...    27   7.4  
AE014134-2252|AAS64695.1| 1548|Drosophila melanogaster CG6214-PK...    27   9.8  
AE014134-2243|AAS64687.1| 1548|Drosophila melanogaster CG6214-PF...    27   9.8  

>U06460-1|AAC46481.1|  704|Drosophila melanogaster transcription
           initiation factorTFIID 85 kDa subunit protein.
          Length = 704

 Score = 55.2 bits (127), Expect = 3e-08
 Identities = 23/43 (53%), Positives = 31/43 (72%)
 Frame = +3

Query: 279 DPYSYEFAYDNLKKFIENSLDIYKHELSTLLYPVFVHMYLILI 407
           D   YE AY  L+ F+E+SLDIYKHELS +LYP+ V +Y  ++
Sbjct: 112 DAQHYEQAYKELRTFVEDSLDIYKHELSMVLYPILVQIYFKIL 154


>AY051960-1|AAK93384.1|  704|Drosophila melanogaster LD42828p
           protein.
          Length = 704

 Score = 55.2 bits (127), Expect = 3e-08
 Identities = 23/43 (53%), Positives = 31/43 (72%)
 Frame = +3

Query: 279 DPYSYEFAYDNLKKFIENSLDIYKHELSTLLYPVFVHMYLILI 407
           D   YE AY  L+ F+E+SLDIYKHELS +LYP+ V +Y  ++
Sbjct: 112 DAQHYEQAYKELRTFVEDSLDIYKHELSMVLYPILVQIYFKIL 154


>AE013599-1190|AAF58737.1|  704|Drosophila melanogaster CG7704-PA
           protein.
          Length = 704

 Score = 55.2 bits (127), Expect = 3e-08
 Identities = 23/43 (53%), Positives = 31/43 (72%)
 Frame = +3

Query: 279 DPYSYEFAYDNLKKFIENSLDIYKHELSTLLYPVFVHMYLILI 407
           D   YE AY  L+ F+E+SLDIYKHELS +LYP+ V +Y  ++
Sbjct: 112 DAQHYEQAYKELRTFVEDSLDIYKHELSMVLYPILVQIYFKIL 154


>AF346730-1|AAK50884.1|  942|Drosophila melanogaster cannonball
           protein.
          Length = 942

 Score = 36.3 bits (80), Expect = 0.016
 Identities = 17/36 (47%), Positives = 23/36 (63%)
 Frame = +3

Query: 291 YEFAYDNLKKFIENSLDIYKHELSTLLYPVFVHMYL 398
           YEFA   L K I+++   YK+E+  LLYP+ V  YL
Sbjct: 323 YEFAVKKLIKLIQSTPSHYKYEIYILLYPLLVLTYL 358


>AE014296-1810|AAF50162.1|  942|Drosophila melanogaster CG6577-PA
           protein.
          Length = 942

 Score = 36.3 bits (80), Expect = 0.016
 Identities = 17/36 (47%), Positives = 23/36 (63%)
 Frame = +3

Query: 291 YEFAYDNLKKFIENSLDIYKHELSTLLYPVFVHMYL 398
           YEFA   L K I+++   YK+E+  LLYP+ V  YL
Sbjct: 323 YEFAVKKLIKLIQSTPSHYKYEIYILLYPLLVLTYL 358


>AY094707-1|AAM11060.1|  394|Drosophila melanogaster GH12838p
           protein.
          Length = 394

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 18/59 (30%), Positives = 31/59 (52%)
 Frame = +3

Query: 189 EASLGDVEYENLNLPEVELASILTAHHTESDPYSYEFAYDNLKKFIENSLDIYKHELST 365
           E SLG +E E +NLP V++    T    E+     +   ++LK+ I+N  +  K + +T
Sbjct: 286 EDSLGPLEKEFVNLPRVDMERSQTYLMVENLDTQLKQMSEDLKEIIDNLNEANKGQDTT 344


>AE013599-2263|AAF58007.1|  394|Drosophila melanogaster CG6251-PA
           protein.
          Length = 394

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 18/59 (30%), Positives = 31/59 (52%)
 Frame = +3

Query: 189 EASLGDVEYENLNLPEVELASILTAHHTESDPYSYEFAYDNLKKFIENSLDIYKHELST 365
           E SLG +E E +NLP V++    T    E+     +   ++LK+ I+N  +  K + +T
Sbjct: 286 EDSLGPLEKEFVNLPRVDMERSQTYLMVENLDTQLKQMSEDLKEIIDNLNEANKGQDTT 344


>AY058376-1|AAL13605.1|  499|Drosophila melanogaster GH14326p
           protein.
          Length = 499

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +3

Query: 195 SLGDVEYENLNLPEVELASILTAHHTESDPYSYEFAYDNLKKFIENS 335
           S GD + E ++    E   +    H E D  ++ +  +NL+K IEN+
Sbjct: 368 SSGDADEEAMDTAADESNDLNAPEHLERDLTAWIYNEENLQKLIENT 414


>AE013599-3349|AAF46811.1|  499|Drosophila melanogaster CG3045-PA
           protein.
          Length = 499

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +3

Query: 195 SLGDVEYENLNLPEVELASILTAHHTESDPYSYEFAYDNLKKFIENS 335
           S GD + E ++    E   +    H E D  ++ +  +NL+K IEN+
Sbjct: 368 SSGDADEEAMDTAADESNDLNAPEHLERDLTAWIYNEENLQKLIENT 414


>AE014134-2252|AAS64695.1| 1548|Drosophila melanogaster CG6214-PK,
            isoform K protein.
          Length = 1548

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 22/76 (28%), Positives = 33/76 (43%)
 Frame = -3

Query: 389  VYKHRIQKS**LMLVYVQRIFNEFFQVVISKFVAIWITFSVVSSEYASQFDLR*IQIFIF 210
            VYKH I KS  + L     + N  FQ        +W+T        A+   LR + + ++
Sbjct: 978  VYKHYI-KSVGIFLSVATLVLNFVFQA-FQIGSNLWLTQWANDQNVANDTGLRDMYLGVY 1035

Query: 209  NVA*TCFLSQYFFCSL 162
                   ++ YFFCSL
Sbjct: 1036 GAFGFGQVTSYFFCSL 1051


>AE014134-2243|AAS64687.1| 1548|Drosophila melanogaster CG6214-PF,
            isoform F protein.
          Length = 1548

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 22/76 (28%), Positives = 33/76 (43%)
 Frame = -3

Query: 389  VYKHRIQKS**LMLVYVQRIFNEFFQVVISKFVAIWITFSVVSSEYASQFDLR*IQIFIF 210
            VYKH I KS  + L     + N  FQ        +W+T        A+   LR + + ++
Sbjct: 978  VYKHYI-KSVGIFLSVATLVLNFVFQA-FQIGSNLWLTQWANDQNVANDTGLRDMYLGVY 1035

Query: 209  NVA*TCFLSQYFFCSL 162
                   ++ YFFCSL
Sbjct: 1036 GAFGFGQVTSYFFCSL 1051


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,476,116
Number of Sequences: 53049
Number of extensions: 325929
Number of successful extensions: 741
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1230182214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)