Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_O23
         (347 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||...    26   1.9  
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    26   1.9  
SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr 1...    25   2.5  
SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid transporter|Schizo...    25   4.4  
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr...    25   4.4  
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    24   7.8  
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    24   7.8  

>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 408

 Score = 25.8 bits (54), Expect = 1.9
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +2

Query: 23  FMRCPLLIVINECCE 67
           F + PLL+++N CCE
Sbjct: 67  FYQSPLLLILNYCCE 81


>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1155

 Score = 25.8 bits (54), Expect = 1.9
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = -1

Query: 296 YCIPEFNSTTGRTLTPVETTTTIRIILWKN 207
           +CI E+NS++ R ++    +  ++ ILW N
Sbjct: 887 FCIFEYNSSSWRNISHNLISAEVQSILWVN 916


>SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 25.4 bits (53), Expect = 2.5
 Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -2

Query: 346 DEQPDQLAETVQPTTDD-TVFLSSIPRRDG 260
           +E   QLAET+ P  DD +V    IP RDG
Sbjct: 43  EECRKQLAETILPLPDDVSVTDILIPTRDG 72


>SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 594

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -3

Query: 207 PELVPDILAVFALYLKPTFQSINDL 133
           P +    L +  +++KPTFQS+ D+
Sbjct: 505 PSVFIAYLLISPIFVKPTFQSLKDV 529


>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 208

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 116 ATSLHRALEQCSPQFVTRNTHLLQSIKD 33
           A SLHRAL+ C  +  +   H   S K+
Sbjct: 134 AVSLHRALDYCKSKHGSNMIHFEASAKE 161


>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = -3

Query: 207 PELVPDILAVFALYLKPTFQSINDLPAALLRDVTAPR 97
           P+  P   + F++      ++IND P ++L +   PR
Sbjct: 345 PDSAPPASSQFSVPFNAAAENINDTPDSVLANSPTPR 381


>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -2

Query: 328 LAETVQPTTDDTVFLSSIPRR 266
           +++T QPTTD+T   S+ P R
Sbjct: 602 MSQTHQPTTDNTSSFSTQPGR 622


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,307,835
Number of Sequences: 5004
Number of extensions: 20991
Number of successful extensions: 60
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)