Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_O23
         (347 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1157 - 34533625-34533875,34535279-34536340,34536673-345368...    27   3.1  
05_01_0308 + 2434642-2434736,2435176-2435245,2435435-2435566,243...    26   7.1  

>02_05_1157 -
           34533625-34533875,34535279-34536340,34536673-34536837,
           34536993-34537941
          Length = 808

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +2

Query: 59  CCESRTAENIVQVRGAVTSRSSAAGRSFID*NVGFRYS 172
           CC+SR   N+     +V     A GR F +     RY+
Sbjct: 192 CCQSRIPPNVTYYEASVQGFQEAQGRIFRENTTSCRYA 229


>05_01_0308 +
           2434642-2434736,2435176-2435245,2435435-2435566,
           2435659-2435722,2435786-2435855,2435952-2436036,
           2437572-2437628,2437894-2438010,2438267-2438337,
           2438703-2439045
          Length = 367

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 162 SGTARTRPIYRELAQVLPQNNSNRCCRLHRSQC 260
           S   RT  IY+E++ + P N++ R   + R  C
Sbjct: 102 SSLNRTEKIYKEISFISPTNDNKRVSLVARLSC 134


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,676,324
Number of Sequences: 37544
Number of extensions: 141045
Number of successful extensions: 322
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 322
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 506210712
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)