Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_O23
         (347 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY053503-1|AAL15429.1| 1107|Homo sapiens ether-a-go-go-like pota...    31   0.99 
BC031226-1|AAH31226.1|  220|Homo sapiens KCNH8 protein protein.        29   3.0  
AB209053-1|BAD92290.1|  583|Homo sapiens potassium voltage-gated...    29   3.0  
AY164485-1|AAO32798.1| 1732|Homo sapiens polycystic kidney disea...    28   9.3  

>AY053503-1|AAL15429.1| 1107|Homo sapiens ether-a-go-go-like potassium
            channel 1 protein.
          Length = 1107

 Score = 31.1 bits (67), Expect = 0.99
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +3

Query: 180  RPIYRELAQVLPQNNSNRCCRLHR-SQCPSRRGIELRNTVSSVVGC 314
            R + R L  VL     +R C LH  S CPSR  ++ R + S+   C
Sbjct: 889  RNVIRLLENVLSPQQPSRFCSLHSTSVCPSRESLQTRTSWSAHQPC 934


>BC031226-1|AAH31226.1|  220|Homo sapiens KCNH8 protein protein.
          Length = 220

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +3

Query: 180 RPIYRELAQVLPQNNSNRCCRLHR-SQCPSRRGIELRNTVSSVVGC 314
           R + + L  VL     +R C LH  S CPSR  ++ R + S+   C
Sbjct: 2   RNVIQLLENVLSPQQPSRFCSLHSTSVCPSRESLQTRTSWSAHQPC 47


>AB209053-1|BAD92290.1|  583|Homo sapiens potassium voltage-gated
           channel, subfamily H, member 8 variant protein.
          Length = 583

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +3

Query: 180 RPIYRELAQVLPQNNSNRCCRLHR-SQCPSRRGIELRNTVSSVVGC 314
           R + + L  VL     +R C LH  S CPSR  ++ R + S+   C
Sbjct: 365 RNVIQLLENVLSPQQPSRFCSLHSTSVCPSRESLQTRTSWSAHQPC 410


>AY164485-1|AAO32798.1| 1732|Homo sapiens polycystic kidney disease
            1-like 3 protein.
          Length = 1732

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +3

Query: 192  RELAQVLPQNNSNRCCRLHR 251
            R  A+V+P+N+ + CC LHR
Sbjct: 1059 RHWARVVPENHHHFCCYLHR 1078


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 46,633,026
Number of Sequences: 237096
Number of extensions: 762152
Number of successful extensions: 1412
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1410
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 2026198370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)