Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_O23
         (347 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40799-2|AAA81480.1|  712|Caenorhabditis elegans Hypothetical pr...    27   2.8  
U28741-6|AAO21428.1|  942|Caenorhabditis elegans Synapse defecti...    27   3.7  
U28741-5|AAO38644.1|  987|Caenorhabditis elegans Synapse defecti...    27   3.7  
AF546880-1|AAN38752.1|  942|Caenorhabditis elegans axon identity...    27   3.7  
Z81107-4|CAB03227.1|  206|Caenorhabditis elegans Hypothetical pr...    26   6.4  
AC024830-9|ABQ13052.1| 1594|Caenorhabditis elegans Hypothetical ...    26   6.4  
U39646-2|AAA80368.2|  223|Caenorhabditis elegans Hypothetical pr...    26   8.5  

>U40799-2|AAA81480.1|  712|Caenorhabditis elegans Hypothetical
           protein F42C5.4 protein.
          Length = 712

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -1

Query: 215 WKNLS*FPIYWPCSRCT*SLHFN 147
           +  L+ FPI W CS C   LH N
Sbjct: 547 YSGLNDFPIRWQCSDCKKRLHSN 569


>U28741-6|AAO21428.1|  942|Caenorhabditis elegans Synapse defective
           protein 1, isoformb protein.
          Length = 942

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -2

Query: 322 ETVQPTTDDTVFLSSIPRRDGH*LRWRRQQRFELFCGRT*ASSR 191
           E    + DD V + SIPRR    +R+ +  R E+   R+  S R
Sbjct: 113 EVSMMSIDDVVLILSIPRRLLLRIRYSKSMRHEIISSRSRESER 156


>U28741-5|AAO38644.1|  987|Caenorhabditis elegans Synapse defective
           protein 1, isoforma protein.
          Length = 987

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -2

Query: 322 ETVQPTTDDTVFLSSIPRRDGH*LRWRRQQRFELFCGRT*ASSR 191
           E    + DD V + SIPRR    +R+ +  R E+   R+  S R
Sbjct: 181 EVSMMSIDDVVLILSIPRRLLLRIRYSKSMRHEIISSRSRESER 224


>AF546880-1|AAN38752.1|  942|Caenorhabditis elegans axon identity
           specification proteinSYD-1 protein.
          Length = 942

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -2

Query: 322 ETVQPTTDDTVFLSSIPRRDGH*LRWRRQQRFELFCGRT*ASSR 191
           E    + DD V + SIPRR    +R+ +  R E+   R+  S R
Sbjct: 113 EVSMMSIDDVVLILSIPRRLLLRIRYSKSMRHEIISSRSRESER 156


>Z81107-4|CAB03227.1|  206|Caenorhabditis elegans Hypothetical
           protein R07H5.4 protein.
          Length = 206

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = -2

Query: 343 EQPDQLAETV-QPTTDDTVFLSSIPRRDGH*LRWRRQQRFELFCGRT 206
           EQ ++  + + +P+++D    ++IP  D H L W     + LF G+T
Sbjct: 48  EQKERNEQIINKPSSEDESSTATIPNTDHHQLTWIPNDAY-LFIGKT 93


>AC024830-9|ABQ13052.1| 1594|Caenorhabditis elegans Hypothetical
            protein Y55F3BR.2 protein.
          Length = 1594

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
 Frame = +3

Query: 198  LAQVLPQNNSNRCC-RLHRSQCPSRRGIELRNTVSSVVGCTVSAS*SGC 341
            L +    N+   CC  +  S CPS R +    T    V C +S   S C
Sbjct: 945  LCRFSQSNHKYYCCGNIQGSMCPSGRSLYRYATTQLPVQCHISPLQSSC 993


>U39646-2|AAA80368.2|  223|Caenorhabditis elegans Hypothetical
          protein F47B7.4 protein.
          Length = 223

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +2

Query: 20 FFMRCPLLIVINECC 64
          FF+  P L+V++ECC
Sbjct: 6  FFLTIPYLMVVSECC 20


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,506,512
Number of Sequences: 27780
Number of extensions: 126976
Number of successful extensions: 343
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 342
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 461821634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)