Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_O23
         (347 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   0.78 
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     20   7.3  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    20   7.3  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     20   9.6  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.4 bits (48), Expect = 0.78
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
 Frame = -1

Query: 131 PRRCSATSLHRALEQCSPQF--VTRNTHL 51
           P +CS TS+H +  Q   Q     R+THL
Sbjct: 362 PSKCSQTSVHYSNGQTHSQLCPTPRSTHL 390


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 20.2 bits (40), Expect = 7.3
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -1

Query: 89  QCSPQFVTRNTHLLQ 45
           Q SPQ+ + ++H+LQ
Sbjct: 437 QPSPQYPSTSSHILQ 451


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 20.2 bits (40), Expect = 7.3
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = -2

Query: 226 ELFCGRT*ASSRYIGRVRAVPEAY 155
           E  C R     R+I     +PEAY
Sbjct: 248 ERLCNRLGRVKRFINWHEPIPEAY 271


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 19.8 bits (39), Expect = 9.6
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 94  LNNVLRSS*LATLIYYNQ*RTSHKKKKK 11
           L+  LR   L+T ++Y Q    +KK KK
Sbjct: 269 LSPYLRFGCLSTRLFYYQLTDLYKKIKK 296


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,325
Number of Sequences: 438
Number of extensions: 1274
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  7936320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)