Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_O22
         (527 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88308-7|AAB42322.1|  207|Caenorhabditis elegans Ribosomal prote...   173   7e-44
U88308-8|AAO61436.1|   88|Caenorhabditis elegans Ribosomal prote...    86   2e-17
U39853-8|AAQ81277.1| 1609|Caenorhabditis elegans Hypothetical pr...    31   0.51 
U39853-7|AAM54194.1| 1614|Caenorhabditis elegans Hypothetical pr...    31   0.51 
U39853-6|AAM54193.2| 1632|Caenorhabditis elegans Hypothetical pr...    31   0.51 
Z70038-7|CAA93886.2|  373|Caenorhabditis elegans Hypothetical pr...    28   4.8  

>U88308-7|AAB42322.1|  207|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 13, isoform a protein.
          Length = 207

 Score =  173 bits (421), Expect = 7e-44
 Identities = 83/173 (47%), Positives = 114/173 (65%), Gaps = 1/173 (0%)
 Frame = +2

Query: 11  NGHFHKDWQRFVKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRCPTVRYHTKV 190
           N HF K W + +KTWF+QPAR+ RR+QNR               LR VVRCP  RY+TK 
Sbjct: 11  NAHFRKHWHKRIKTWFDQPARKLRRRQNRQAKAVEIAPRPVAGLLRSVVRCPQKRYNTKT 70

Query: 191 RAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESLQINVQRLKEYRARLILFP-K 367
           R GRGF+L+E++A+G++ + ARTIGIAVD RR NK+ E L+ N  RLKEY+A+LILFP K
Sbjct: 71  RLGRGFSLQELKAAGISQAQARTIGIAVDVRRTNKTAEGLKANADRLKEYKAKLILFPKK 130

Query: 368 GKKVLKGEANEEERKLATQLRGPLMPVQQTAPKSVARPITEDEKNFKAYQYLR 526
                KG+++ EE K+A QLRG ++P+  T      R +T+ E+  + ++ LR
Sbjct: 131 ASAPKKGDSSAEELKVAAQLRGDVLPLSHTITFDEPRQVTDAERKVEIFRLLR 183


>U88308-8|AAO61436.1|   88|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 13, isoform b protein.
          Length = 88

 Score = 85.8 bits (203), Expect = 2e-17
 Identities = 38/77 (49%), Positives = 49/77 (63%)
 Frame = +2

Query: 11  NGHFHKDWQRFVKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRCPTVRYHTKV 190
           N HF K W + +KTWF+QPAR+ RR+QNR               LR VVRCP  RY+TK 
Sbjct: 11  NAHFRKHWHKRIKTWFDQPARKLRRRQNRQAKAVEIAPRPVAGLLRSVVRCPQKRYNTKT 70

Query: 191 RAGRGFTLREIRASGLN 241
           R GRGF+L+E++A+  N
Sbjct: 71  RLGRGFSLQELKAAEEN 87


>U39853-8|AAQ81277.1| 1609|Caenorhabditis elegans Hypothetical protein
            F13B9.1c protein.
          Length = 1609

 Score = 31.1 bits (67), Expect = 0.51
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = +2

Query: 353  ILFPKGKKVLKGEANEEERKLATQLRGPLMPVQQTAPKSVARPITEDEKNFK 508
            ++F   K VLK     + +  A   +GPL+P  Q+AP +V   IT+  +N K
Sbjct: 879  VVFDDIKSVLKDVPTLQVKDAAMTFKGPLIP-HQSAPHTVRLYITKQIENIK 929


>U39853-7|AAM54194.1| 1614|Caenorhabditis elegans Hypothetical protein
            F13B9.1b protein.
          Length = 1614

 Score = 31.1 bits (67), Expect = 0.51
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = +2

Query: 353  ILFPKGKKVLKGEANEEERKLATQLRGPLMPVQQTAPKSVARPITEDEKNFK 508
            ++F   K VLK     + +  A   +GPL+P  Q+AP +V   IT+  +N K
Sbjct: 879  VVFDDIKSVLKDVPTLQVKDAAMTFKGPLIP-HQSAPHTVRLYITKQIENIK 929


>U39853-6|AAM54193.2| 1632|Caenorhabditis elegans Hypothetical protein
            F13B9.1a protein.
          Length = 1632

 Score = 31.1 bits (67), Expect = 0.51
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = +2

Query: 353  ILFPKGKKVLKGEANEEERKLATQLRGPLMPVQQTAPKSVARPITEDEKNFK 508
            ++F   K VLK     + +  A   +GPL+P  Q+AP +V   IT+  +N K
Sbjct: 901  VVFDDIKSVLKDVPTLQVKDAAMTFKGPLIP-HQSAPHTVRLYITKQIENIK 951


>Z70038-7|CAA93886.2|  373|Caenorhabditis elegans Hypothetical
           protein ZK1067.7 protein.
          Length = 373

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 154 CSLPYCALSYKSSCRQRIYPT 216
           CS P C  S +SSC+Q   PT
Sbjct: 204 CSTPICIQSCQSSCQQACQPT 224


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,157,566
Number of Sequences: 27780
Number of extensions: 208304
Number of successful extensions: 541
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1038911524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)