Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_O20
(490 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_04_0086 + 15916555-15916905,15917236-15917262 31 0.38
02_01_0418 - 3059575-3061279,3061915-3061973,3064270-3064353,306... 29 1.5
12_01_0676 + 5765154-5765241,5765329-5765453,5765533-5765604,576... 29 2.0
08_02_0749 - 20769224-20770535,20770649-20771510,20771622-207732... 28 3.5
02_05_1004 + 33444248-33444847 28 3.5
10_06_0157 + 11314030-11314261,11314447-11314634,11315003-11315434 28 4.6
02_05_0263 - 27257150-27259213 27 6.1
03_05_1013 + 29680057-29680226,29682272-29682417,29683417-296834... 27 8.1
>01_04_0086 + 15916555-15916905,15917236-15917262
Length = 125
Score = 31.5 bits (68), Expect = 0.38
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +2
Query: 314 SGRFQTGENLYWYSTTDSTYKLNVDNAMESWFNEYNDYKYA 436
S R GENL+W S +A++SW E +DY YA
Sbjct: 72 SNRNNLGENLFWGSAGGDW---TAASAVQSWVGEKSDYDYA 109
>02_01_0418 -
3059575-3061279,3061915-3061973,3064270-3064353,
3064395-3064559
Length = 670
Score = 29.5 bits (63), Expect = 1.5
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +3
Query: 84 VLDTSIVNLY*TCHANKSKISSTDTIIGDNYWLRVRYQDTLLQ 212
+ + S ++ T HA KS + T IG+N+W V QD ++
Sbjct: 356 ITENSFSDIAKTLHAFKSSRNLTTLFIGENFWGEVIPQDETIE 398
>12_01_0676 +
5765154-5765241,5765329-5765453,5765533-5765604,
5765728-5765802,5765880-5765905,5766709-5766870,
5766963-5767037,5767133-5767204,5767289-5767363,
5767461-5767529,5767839-5767910,5768030-5768161,
5768430-5768920,5769315-5769476,5769570-5769709,
5769818-5770037,5770398-5770633,5771560-5772051
Length = 927
Score = 29.1 bits (62), Expect = 2.0
Identities = 24/125 (19%), Positives = 45/125 (36%), Gaps = 4/125 (3%)
Frame = +2
Query: 77 VVCIGHVHSKSLLNLSCKQIKDFVNGHNYRRQLLAKGQVSGHPAATEMKYMVWDEELXXX 256
++C G+ + L + + ++D GH+ ++ G + + W+ E
Sbjct: 60 IICTGNRVTSMLKTVKFRTVRDAFRGHSVLIRIAVPGLILQQELEWPPSFNHWNLEQAPK 119
Query: 257 XXXXXXQNKNFHNPDKTLGSGRFQTG--ENLYWYSTTDS--TYKLNVDNAMESWFNEYND 424
+ N +K GS G LYW+ D+ T L + NA +
Sbjct: 120 LNSCRLRLYRSLNSNKFTGSIPPSLGGLSKLYWFDLADNQLTGGLPISNATSPGLDNLTS 179
Query: 425 YKYAH 439
K+ H
Sbjct: 180 TKHFH 184
>08_02_0749 -
20769224-20770535,20770649-20771510,20771622-20773263,
20773357-20773701,20773858-20773952,20774218-20774344,
20774430-20774435
Length = 1462
Score = 28.3 bits (60), Expect = 3.5
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +2
Query: 284 NFHNPDKTLGSGRFQTGENLYWYSTTDSTYKLNVDNAMESW 406
N NPDK++G + E + T DS +++ AME+W
Sbjct: 406 NASNPDKSVGGLQDAVVETKHSNGTRDSRLHWDLNVAMEAW 446
>02_05_1004 + 33444248-33444847
Length = 199
Score = 28.3 bits (60), Expect = 3.5
Identities = 20/88 (22%), Positives = 34/88 (38%)
Frame = +2
Query: 227 MVWDEELXXXXXXXXXQNKNFHNPDKTLGSGRFQTGENLYWYSTTDSTYKLNVDNAMESW 406
+ W L Q + + G+F GEN++W + +A++ W
Sbjct: 79 LAWSPRLESYARWWAAQRRGDCALRHSFPEGQFALGENIFWGGAGGA---WRPGDAVKDW 135
Query: 407 FNEYNDYKYAHLKQSDFDKSKXKIGHYT 490
E DY YA ++ + + GHYT
Sbjct: 136 AAEGVDYSYA----ANACAAGRECGHYT 159
>10_06_0157 + 11314030-11314261,11314447-11314634,11315003-11315434
Length = 283
Score = 27.9 bits (59), Expect = 4.6
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +2
Query: 383 VDNAMESWFNE-YNDYKYAHLKQSDFDKSKXKIGH 484
V+ +F++ YND AH+ S++D S+ +GH
Sbjct: 2 VEEDPHDFFSQSYNDAPAAHMNGSEYDFSQGSLGH 36
>02_05_0263 - 27257150-27259213
Length = 687
Score = 27.5 bits (58), Expect = 6.1
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +3
Query: 81 YVLDTSIVNLY*TCHANKSKISS 149
Y+L+T IVNLY C A +S +++
Sbjct: 168 YILETCIVNLYTRCGAYQSAVAT 190
>03_05_1013 +
29680057-29680226,29682272-29682417,29683417-29683493,
29683577-29683699,29683781-29683849,29684824-29684925,
29684998-29685078,29685161-29685313,29685442-29685513,
29685773-29685936,29686046-29686091,29686268-29686337,
29686509-29686594
Length = 452
Score = 27.1 bits (57), Expect = 8.1
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +2
Query: 299 DKTLGSGRFQTGENLYWYSTTDSTYKLNVDNAMESWFNEYNDYKYAH 439
D +GSG F + Y+ D + L V ++ WFN++ Y H
Sbjct: 139 DTPVGSG-FSYARDPKGYNVGDISSSLQVVTFLKKWFNDHPSYLSNH 184
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,355,203
Number of Sequences: 37544
Number of extensions: 240179
Number of successful extensions: 449
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 448
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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