Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_O20
         (490 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    22   4.0  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    22   4.0  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    22   4.0  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    21   9.3  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    21   9.3  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    21   9.3  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    21   9.3  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    21   9.3  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    21   9.3  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   9.3  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   9.3  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    21   9.3  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    21   9.3  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   9.3  

>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = -3

Query: 374 CMCYRSLNTNTNFHQSGIFPIPKSCPGY 291
           C  YR L  N N+ +    P+P  C  +
Sbjct: 101 CNNYRKLYYNINYIEQIPIPVPIYCGNF 128


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 9/28 (32%), Positives = 12/28 (42%)
 Frame = -3

Query: 380 SVCMCYRSLNTNTNFHQSGIFPIPKSCP 297
           S   C   L      + +GI P+P  CP
Sbjct: 194 SALACAIMLGPRLGRYDNGIDPLPLGCP 221


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -2

Query: 408 NQLSIALSTFSLYVLSVVEYQYKFS 334
           N LSI  ST ++YVLS    Q  FS
Sbjct: 349 NDLSIDRSTNTMYVLSDNFQQLLFS 373


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = +3

Query: 141 ISSTDTIIGDNYWLRVRYQDTLLQLK*NIWCGMKN 245
           +   + I+  N WL++ + D  LQ   + + G+K+
Sbjct: 26  VDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKD 60


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = +3

Query: 141 ISSTDTIIGDNYWLRVRYQDTLLQLK*NIWCGMKN 245
           +   + I+  N WL++ + D  LQ   + + G+K+
Sbjct: 26  VDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKD 60


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = +3

Query: 141 ISSTDTIIGDNYWLRVRYQDTLLQLK*NIWCGMKN 245
           +   + I+  N WL++ + D  LQ   + + G+K+
Sbjct: 26  VDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKD 60


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = +3

Query: 141 ISSTDTIIGDNYWLRVRYQDTLLQLK*NIWCGMKN 245
           +   + I+  N WL++ + D  LQ   + + G+K+
Sbjct: 26  VDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKD 60


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = +3

Query: 141 ISSTDTIIGDNYWLRVRYQDTLLQLK*NIWCGMKN 245
           +   + I+  N WL++ + D  LQ   + + G+K+
Sbjct: 26  VDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKD 60


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = +3

Query: 141 ISSTDTIIGDNYWLRVRYQDTLLQLK*NIWCGMKN 245
           +   + I+  N WL++ + D  LQ   + + G+K+
Sbjct: 26  VDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKD 60


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = +3

Query: 141 ISSTDTIIGDNYWLRVRYQDTLLQLK*NIWCGMKN 245
           +   + I+  N WL++ + D  LQ   + + G+K+
Sbjct: 94  VDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKD 128


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = +3

Query: 141 ISSTDTIIGDNYWLRVRYQDTLLQLK*NIWCGMKN 245
           +   + I+  N WL++ + D  LQ   + + G+K+
Sbjct: 94  VDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKD 128


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +2

Query: 107 SLLNLSCKQIKDFVNGHNYRR 169
           S L+ SC    ++ N +NY++
Sbjct: 305 SSLSNSCNYSNNYYNNNNYKK 325


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +2

Query: 353 STTDSTYKLNVDNAMESWFNEYNDY 427
           S+  + YK +  N   + +N YN+Y
Sbjct: 316 SSLSNNYKYSNYNNYNNNYNNYNNY 340


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 10/37 (27%), Positives = 15/37 (40%)
 Frame = +2

Query: 53  RALLILAMVVCIGHVHSKSLLNLSCKQIKDFVNGHNY 163
           RA + +    C G V  +      CK  + F +G  Y
Sbjct: 399 RAFVRILCACCPGRVRRRYQPAFRCKPSQRFASGRYY 435


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,554
Number of Sequences: 438
Number of extensions: 2842
Number of successful extensions: 14
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13421061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)