Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_O19
         (507 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding pr...    21   5.6  
X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.           21   9.7  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    21   9.7  

>AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding
           protein protein.
          Length = 132

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 411 PDCLGKRPALANCDDVSDF 355
           PD LGKR  L + ++  DF
Sbjct: 2   PDFLGKRYKLYSSENFDDF 20


>X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.
          Length = 103

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 19 GSDRESVQKQATVFLNRKGGMKR 87
          G + + + K A   L R+GG+KR
Sbjct: 24 GDNIQGITKPAIRRLARRGGVKR 46


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 204 PYPDRRCSENENAA 245
           PYPD   ++NEN +
Sbjct: 104 PYPDWTWAKNENCS 117


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,440
Number of Sequences: 438
Number of extensions: 2954
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13986774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)