Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_O18
(542 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 276 1e-75
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 276 1e-75
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 276 1e-75
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 85 5e-18
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 77 2e-15
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 70 3e-13
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 30 0.25
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 26 3.1
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||... 26 4.1
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb... 26 4.1
SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces pomb... 26 4.1
SPAC6F6.09 |||NuA4 histone acetyltransferase complex subunit |Sc... 25 5.5
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos... 25 7.2
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce... 25 9.5
SPBC1718.05 |trs31||TRAPP complex subunit Trs31 |Schizosaccharom... 25 9.5
SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger protein|Schiz... 25 9.5
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 25 9.5
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 276 bits (677), Expect = 1e-75
Identities = 125/177 (70%), Positives = 150/177 (84%)
Frame = +1
Query: 10 IVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKM 189
IV VNKMD+T +S++RFEEI KE S++IKK+G+NP V FVP+SG+ GDNM+EP+T M
Sbjct: 149 IVAVNKMDTTG--WSQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNM 206
Query: 190 PWFKGWLVERKEGKAEGKCLIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVE 369
PW++GW E K G +GK L+EA+D+I PPARPTDK LRLPLQDVYKIGGIGTVPVGRVE
Sbjct: 207 PWYQGWQKETKAGVVKGKTLLEAIDSIEPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVE 266
Query: 370 TGILKPGTVVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKDLRRGYV 540
TG++KPG +V FAPA +TTEVKSVEMHHE+L +PGDNVGFNVKNVSVKD+RRG V
Sbjct: 267 TGVIKPGMIVTFAPAGVTTEVKSVEMHHESLDAGLPGDNVGFNVKNVSVKDIRRGNV 323
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 276 bits (677), Expect = 1e-75
Identities = 125/177 (70%), Positives = 150/177 (84%)
Frame = +1
Query: 10 IVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKM 189
IV VNKMD+T +S++RFEEI KE S++IKK+G+NP V FVP+SG+ GDNM+EP+T M
Sbjct: 149 IVAVNKMDTTG--WSQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNM 206
Query: 190 PWFKGWLVERKEGKAEGKCLIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVE 369
PW++GW E K G +GK L+EA+D+I PPARPTDK LRLPLQDVYKIGGIGTVPVGRVE
Sbjct: 207 PWYQGWQKETKAGVVKGKTLLEAIDSIEPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVE 266
Query: 370 TGILKPGTVVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKDLRRGYV 540
TG++KPG +V FAPA +TTEVKSVEMHHE+L +PGDNVGFNVKNVSVKD+RRG V
Sbjct: 267 TGVIKPGMIVTFAPAGVTTEVKSVEMHHESLDAGLPGDNVGFNVKNVSVKDIRRGNV 323
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 276 bits (677), Expect = 1e-75
Identities = 125/177 (70%), Positives = 150/177 (84%)
Frame = +1
Query: 10 IVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKM 189
IV VNKMD+T +S++RFEEI KE S++IKK+G+NP V FVP+SG+ GDNM+EP+T M
Sbjct: 149 IVAVNKMDTTG--WSQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNM 206
Query: 190 PWFKGWLVERKEGKAEGKCLIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVE 369
PW++GW E K G +GK L+EA+D+I PPARPTDK LRLPLQDVYKIGGIGTVPVGRVE
Sbjct: 207 PWYQGWQKETKAGVVKGKTLLEAIDSIEPPARPTDKPLRLPLQDVYKIGGIGTVPVGRVE 266
Query: 370 TGILKPGTVVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKDLRRGYV 540
TG++KPG +V FAPA +TTEVKSVEMHHE+L +PGDNVGFNVKNVSVKD+RRG V
Sbjct: 267 TGVIKPGMIVTFAPAGVTTEVKSVEMHHESLDAGLPGDNVGFNVKNVSVKDIRRGNV 323
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 85.4 bits (202), Expect = 5e-18
Identities = 62/179 (34%), Positives = 91/179 (50%), Gaps = 4/179 (2%)
Frame = +1
Query: 10 IVGVNKMDSTEPPYSESRFEEIKKEVSSY-IKKIGYNPAAVAFVPISGWHGDNMLEPSTK 186
+V VNK+D +SE RF+EIK VS + IK +G+ + V FVPIS G N+++ +
Sbjct: 319 VVSVNKLDLMS--WSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSS 376
Query: 187 --MPWFKGWLVERKEGKAEGKCLIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVG 360
W+KG L+ ALD ++PP +P K LRL + DVY+ TV G
Sbjct: 377 DLYKWYKG------------PTLLSALDQLVPPEKPYRKPLRLSIDDVYRSPRSVTV-TG 423
Query: 361 RVETGILKPGTVVVFAPANITTEVKSVEMHHEALQE-AVPGDNVGFNVKNVSVKDLRRG 534
RVE G ++ V+ + VK+V + + AV GD V + ++ V LR G
Sbjct: 424 RVEAGNVQVNQVLYDVSSQEDAYVKNVIRNSDPSSTWAVAGDTVTLQLADIEVNQLRPG 482
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 76.6 bits (180), Expect = 2e-15
Identities = 51/182 (28%), Positives = 94/182 (51%), Gaps = 5/182 (2%)
Frame = +1
Query: 10 IVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKI-GYNPAA-VAFVPISGWHGDNMLE--P 177
+V +NKMD +SE R++E ++S +++++ GYN V ++P+S + G N+ +
Sbjct: 380 VVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD 439
Query: 178 STKMPWFKGWLVERKEGKAEGKCLIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPV 357
S+ PW+ +G L+E LD++ R + +P+ YK +GT+
Sbjct: 440 SSVCPWY------------QGPSLLEYLDSMTHLERKVNAPFIMPIASKYK--DLGTILE 485
Query: 358 GRVETGILKPGTVVVFAPANITTEVKSV-EMHHEALQEAVPGDNVGFNVKNVSVKDLRRG 534
G++E G +K + V+ P N T EV ++ + E + ++ GD V V+ D++ G
Sbjct: 486 GKIEAGSIKKNSNVLVMPINQTLEVTAIYDEADEEISSSICGDQVRLRVRG-DDSDVQTG 544
Query: 535 YV 540
YV
Sbjct: 545 YV 546
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 69.7 bits (163), Expect = 3e-13
Identities = 38/101 (37%), Positives = 59/101 (58%), Gaps = 3/101 (2%)
Frame = +1
Query: 247 LIEALDAILP-PARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGT--VVVFAPAN 417
L+EA+D+ + P R TD + ++DV+ I G GTV GRVE G LK G +V ++
Sbjct: 234 LMEAVDSYITLPERKTDVPFLMAIEDVFSISGRGTVVTGRVERGTLKKGAEIEIVGYGSH 293
Query: 418 ITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKDLRRGYV 540
+ T V +EM + L AV GDN G ++++ + L+RG +
Sbjct: 294 LKTTVTGIEMFKKQLDAAVAGDNCGLLLRSIKREQLKRGMI 334
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 29.9 bits (64), Expect = 0.25
Identities = 20/62 (32%), Positives = 32/62 (51%)
Frame = -1
Query: 500 TLKPTLSPGTASCRASWCISTDLTSVVMLAGAKTTTVPGFRIPVSTLPTGTVPIPPILYT 321
T+ + + ASC S + + +SVV+ + +T TV + VST TGTV +P
Sbjct: 65 TIAISQTDNAASCIPSASLLS--SSVVLYSAKETVTVSSYWSLVSTSVTGTVYVPYTSSV 122
Query: 320 SC 315
+C
Sbjct: 123 AC 124
Score = 26.6 bits (56), Expect = 2.4
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 35 PLSHHTVSLDLRKSRRKSLPTSRKLVTIRLPSLS 136
P S +++ +K +LPTS K++T PS+S
Sbjct: 402 PTSFPSLTSSTKKIPSTTLPTSSKMITTTTPSVS 435
>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1588
Score = 26.2 bits (55), Expect = 3.1
Identities = 17/56 (30%), Positives = 31/56 (55%)
Frame = -3
Query: 327 VYVLQGKTESLVSGASRRKDGVEGLNKAFTFSLSFFTLNQPSLEPWHFGGRLQHVI 160
V++ Q + S++ G + + V LNKAF+ S + F + S P HF ++ +V+
Sbjct: 1522 VWLSQAYSPSVLQGTT---ENVAFLNKAFSASANLFDVLPVSNTPSHF-SKMDYVL 1573
>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 709
Score = 25.8 bits (54), Expect = 4.1
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = -1
Query: 443 STDLTSVVMLAGAKTTTVPGFRIPVSTLPTGT--VPIPPIL 327
++DLT+ L +T+ + + + PT T +PIP +L
Sbjct: 615 NSDLTNSSTLLSPTSTSFTSYTVSATATPTSTSHIPIPTVL 655
>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 929
Score = 25.8 bits (54), Expect = 4.1
Identities = 13/50 (26%), Positives = 23/50 (46%)
Frame = +2
Query: 80 RKSLPTSRKLVTIRLPSLSYPFLAGTEITCWSRPPKCHGSRDGWLSVKKE 229
R+S S + + LPS PF++ + + ++P G + KKE
Sbjct: 639 RRSFKPSEEAAKLSLPSRKNPFVSDSAVLKVNKPEMKEGQKKAEARKKKE 688
>SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 347
Score = 25.8 bits (54), Expect = 4.1
Identities = 18/57 (31%), Positives = 28/57 (49%)
Frame = +1
Query: 28 MDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWF 198
+D +P + F IKK+V Y+ ++ + P + G N LEP TK PW+
Sbjct: 107 LDLKKPLLPQILFGNIKKDV--YLDQV-HRPRHYRGSGSAPLFG-NFLEPLTKTPWY 159
>SPAC6F6.09 |||NuA4 histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 138
Score = 25.4 bits (53), Expect = 5.5
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 37 TEPPYSESRFEEIKKEVSSYIKK 105
+EPP + S +E+ KKE+ I+K
Sbjct: 9 SEPPVNVSYYEQCKKELHEMIEK 31
>SPBC11B10.05c |rsp1||random septum position protein
Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 494
Score = 25.0 bits (52), Expect = 7.2
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Frame = +1
Query: 79 KEVS---SYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKG 204
KEVS SYI +P +G+ +N+++P + P FKG
Sbjct: 159 KEVSTSKSYISSGYLHPKTSPIFKKNGYATENVVDPISSSPRFKG 203
>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1112
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/36 (27%), Positives = 19/36 (52%)
Frame = +1
Query: 205 WLVERKEGKAEGKCLIEALDAILPPARPTDKALRLP 312
+L+ + K G E++DA+LP + +L +P
Sbjct: 628 YLLSSENAKDTGDIKSESIDAVLPTLETSSPSLSIP 663
>SPBC1718.05 |trs31||TRAPP complex subunit Trs31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 209
Score = 24.6 bits (51), Expect = 9.5
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +2
Query: 308 FPCKTYTKSAVLEQYPW 358
FPCK S L QYP+
Sbjct: 173 FPCKASAHSVPLSQYPY 189
>SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 218
Score = 24.6 bits (51), Expect = 9.5
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +3
Query: 375 YPKAWYCCRFCPC*HH 422
YPK CC+FC HH
Sbjct: 147 YPKGG-CCKFCSSVHH 161
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 24.6 bits (51), Expect = 9.5
Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 5/94 (5%)
Frame = -3
Query: 447 HFHGLDFSSDVSRGKNDNSTRL*DTSFNSTHGYCSNTADFVYVLQG-----KTESLVSGA 283
++H D+ ++++ N ++T++ ++N + A Q +T L S +
Sbjct: 261 NYHLFDYYNEIASSPNPSTTKI---TYNPPKLPMKDFATLPIGYQSTCDSDETSELSSTS 317
Query: 282 SRRKDGVEGLNKAFTFSLSFFTLNQPSLEPWHFG 181
S + VEGLN S N PS + HFG
Sbjct: 318 SEQTSDVEGLNAYNNLGASSDIENAPSSQ-LHFG 350
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.136 0.405
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,477,979
Number of Sequences: 5004
Number of extensions: 53411
Number of successful extensions: 158
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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