Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_O18
(542 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 307 3e-84
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 307 3e-84
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 307 4e-84
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 81 7e-16
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 70 1e-12
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 70 1e-12
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 57 9e-09
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 57 9e-09
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 57 9e-09
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 54 9e-08
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 47 8e-06
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 47 8e-06
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 39 0.003
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 38 0.006
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 36 0.025
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 36 0.025
U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-... 31 0.71
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-... 31 0.71
Z81076-4|CAB03053.1| 172|Caenorhabditis elegans Hypothetical pr... 29 1.6
AF039711-8|ABS19466.1| 766|Caenorhabditis elegans Hypothetical ... 29 1.6
U53154-3|AAC25852.1| 346|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z70208-11|CAA94144.1| 598|Caenorhabditis elegans Hypothetical p... 28 3.8
Z50016-15|CAA90319.1| 329|Caenorhabditis elegans Hypothetical p... 28 3.8
AL032621-9|CAA21496.1| 329|Caenorhabditis elegans Hypothetical ... 28 3.8
U58740-1|AAB00611.1| 1073|Caenorhabditis elegans Hypothetical pr... 28 5.0
Z75554-1|CAA99953.3| 681|Caenorhabditis elegans Hypothetical pr... 27 6.6
U41993-3|AAA83445.1| 384|Caenorhabditis elegans Nuclear hormone... 27 6.6
U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch... 27 8.7
U58756-9|AAC48086.1| 667|Caenorhabditis elegans Hypothetical pr... 27 8.7
U56961-6|AAK39299.1| 497|Caenorhabditis elegans Hypothetical pr... 27 8.7
U00045-1|AAM29684.1| 1099|Caenorhabditis elegans Temporarily ass... 27 8.7
U00032-9|AAA50631.1| 229|Caenorhabditis elegans Hypothetical pr... 27 8.7
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch... 27 8.7
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 307 bits (754), Expect = 3e-84
Identities = 142/177 (80%), Positives = 156/177 (88%)
Frame = +1
Query: 10 IVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKM 189
IV NKMDSTEPP+SE+RF EI EVS +IKKIGYNP AV FVPISG++GDNMLE S+ M
Sbjct: 149 IVACNKMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLEVSSNM 208
Query: 190 PWFKGWLVERKEGKAEGKCLIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVE 369
PWFKGW VERKEG A GK L+EALD+I+PP RPTD+ LRLPLQDVYKIGGIGTVPVGRVE
Sbjct: 209 PWFKGWAVERKEGNASGKTLLEALDSIIPPQRPTDRPLRLPLQDVYKIGGIGTVPVGRVE 268
Query: 370 TGILKPGTVVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKDLRRGYV 540
TGI+KPG VV FAP N+TTEVKSVEMHHE+L EAVPGDNVGFNVKNVSVKD+RRG V
Sbjct: 269 TGIIKPGMVVTFAPQNVTTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSV 325
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 307 bits (754), Expect = 3e-84
Identities = 142/177 (80%), Positives = 156/177 (88%)
Frame = +1
Query: 10 IVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKM 189
IV NKMDSTEPP+SE+RF EI EVS +IKKIGYNP AV FVPISG++GDNMLE S+ M
Sbjct: 149 IVACNKMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLEVSSNM 208
Query: 190 PWFKGWLVERKEGKAEGKCLIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVE 369
PWFKGW VERKEG A GK L+EALD+I+PP RPTD+ LRLPLQDVYKIGGIGTVPVGRVE
Sbjct: 209 PWFKGWAVERKEGNASGKTLLEALDSIIPPQRPTDRPLRLPLQDVYKIGGIGTVPVGRVE 268
Query: 370 TGILKPGTVVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKDLRRGYV 540
TGI+KPG VV FAP N+TTEVKSVEMHHE+L EAVPGDNVGFNVKNVSVKD+RRG V
Sbjct: 269 TGIIKPGMVVTFAPQNVTTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSV 325
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 307 bits (753), Expect = 4e-84
Identities = 141/177 (79%), Positives = 156/177 (88%)
Frame = +1
Query: 10 IVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKM 189
+V NKMDSTEPP+SE+RF EI EVS +IKKIGYNP AV FVPISG++GDNMLE S+ M
Sbjct: 115 VVACNKMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLEVSSNM 174
Query: 190 PWFKGWLVERKEGKAEGKCLIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVE 369
PWFKGW VERKEG A GK L+EALD+I+PP RPTD+ LRLPLQDVYKIGGIGTVPVGRVE
Sbjct: 175 PWFKGWAVERKEGNASGKTLLEALDSIIPPQRPTDRPLRLPLQDVYKIGGIGTVPVGRVE 234
Query: 370 TGILKPGTVVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKDLRRGYV 540
TGI+KPG VV FAP N+TTEVKSVEMHHE+L EAVPGDNVGFNVKNVSVKD+RRG V
Sbjct: 235 TGIIKPGMVVTFAPQNVTTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSV 291
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 80.6 bits (190), Expect = 7e-16
Identities = 49/179 (27%), Positives = 90/179 (50%), Gaps = 2/179 (1%)
Frame = +1
Query: 10 IVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAA-VAFVPISGWHGDNMLEPSTK 186
++ VNKMD + E RF+EI+ +++ +++K+G+NP + +VP SG G + + T
Sbjct: 251 VILVNKMDDPTVKWEEERFKEIEGKLTPFLRKLGFNPKTDITYVPCSGLTGAFIKDRPTG 310
Query: 187 MPWFKGWLVERKEGKAEGKCLIEALDAILPP-ARPTDKALRLPLQDVYKIGGIGTVPVGR 363
W G C IE +D +LP R + +R + + Y +GTV +G+
Sbjct: 311 SEG--NWY--------SGPCFIEFIDVLLPSYKRDFNGPVRCTVAEKYS--EMGTVIIGK 358
Query: 364 VETGILKPGTVVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKDLRRGYV 540
+E+G ++ G +V P +V + + V GDN+ F +K + +L+ G++
Sbjct: 359 MESGCVQKGDTLVVMPNKQPVQVLQIWADDVETERVVAGDNIKFKLKGIEENELQGGFI 417
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 69.7 bits (163), Expect = 1e-12
Identities = 42/141 (29%), Positives = 79/141 (56%), Gaps = 2/141 (1%)
Frame = +1
Query: 10 IVGVNKMDSTEPPYSESRFEEIKKEVSSYI-KKIGYNPAAVAFVPISGWHGDNMLEPSTK 186
IV VNK+D+ + +S+ RF+EIK +S ++ ++ G++ FVP+SG+ G+N+++ +
Sbjct: 312 IVAVNKLDTVD--WSQDRFDEIKNNLSVFLTRQAGFSKPK--FVPVSGFTGENLIK-RME 366
Query: 187 MPWFKGWLVERKEGKAEGKCLIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRV 366
+ W+ +G CL+E +D+ + P P+D LR+ + DV K+ V G++
Sbjct: 367 LDWY------------DGPCLLELIDSFVAPQPPSDGPLRIGISDVLKVASNQLVVSGKI 414
Query: 367 ETG-ILKPGTVVVFAPANITT 426
E+G + K V + + T
Sbjct: 415 ESGEVEKDDKVYIMSSVTAAT 435
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 69.7 bits (163), Expect = 1e-12
Identities = 42/141 (29%), Positives = 79/141 (56%), Gaps = 2/141 (1%)
Frame = +1
Query: 10 IVGVNKMDSTEPPYSESRFEEIKKEVSSYI-KKIGYNPAAVAFVPISGWHGDNMLEPSTK 186
IV VNK+D+ + +S+ RF+EIK +S ++ ++ G++ FVP+SG+ G+N+++ +
Sbjct: 330 IVAVNKLDTVD--WSQDRFDEIKNNLSVFLTRQAGFSKPK--FVPVSGFTGENLIK-RME 384
Query: 187 MPWFKGWLVERKEGKAEGKCLIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRV 366
+ W+ +G CL+E +D+ + P P+D LR+ + DV K+ V G++
Sbjct: 385 LDWY------------DGPCLLELIDSFVAPQPPSDGPLRIGISDVLKVASNQLVVSGKI 432
Query: 367 ETG-ILKPGTVVVFAPANITT 426
E+G + K V + + T
Sbjct: 433 ESGEVEKDDKVYIMSSVTAAT 453
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 56.8 bits (131), Expect = 9e-09
Identities = 39/111 (35%), Positives = 57/111 (51%), Gaps = 6/111 (5%)
Frame = +1
Query: 226 GKAEGKCLIEALD-AILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPG-TVV 399
G+ K L+E LD + P R ++ + VY I G GTV G++E GILK G +
Sbjct: 226 GEEAVKQLLEVLDNKFVIPERKVNEEPMFAAEHVYSIVGRGTVITGKLERGILKRGDKIE 285
Query: 400 VFAPANITTEVKSV----EMHHEALQEAVPGDNVGFNVKNVSVKDLRRGYV 540
+ T VKSV E + + +A PGD +G ++ + KD+RRG V
Sbjct: 286 IVGGTKDGTTVKSVISGLESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCV 336
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 56.8 bits (131), Expect = 9e-09
Identities = 39/111 (35%), Positives = 57/111 (51%), Gaps = 6/111 (5%)
Frame = +1
Query: 226 GKAEGKCLIEALD-AILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPG-TVV 399
G+ K L+E LD + P R ++ + VY I G GTV G++E GILK G +
Sbjct: 227 GEEAVKQLLEVLDNKFVIPERKVNEEPMFAAEHVYSIVGRGTVITGKLERGILKRGDKIE 286
Query: 400 VFAPANITTEVKSV----EMHHEALQEAVPGDNVGFNVKNVSVKDLRRGYV 540
+ T VKSV E + + +A PGD +G ++ + KD+RRG V
Sbjct: 287 IVGGTKDGTTVKSVISGLESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCV 337
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 56.8 bits (131), Expect = 9e-09
Identities = 39/111 (35%), Positives = 57/111 (51%), Gaps = 6/111 (5%)
Frame = +1
Query: 226 GKAEGKCLIEALD-AILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPG-TVV 399
G+ K L+E LD + P R ++ + VY I G GTV G++E GILK G +
Sbjct: 227 GEEAVKQLLEVLDNKFVIPERKVNEEPMFAAEHVYSIVGRGTVITGKLERGILKRGDKIE 286
Query: 400 VFAPANITTEVKSV----EMHHEALQEAVPGDNVGFNVKNVSVKDLRRGYV 540
+ T VKSV E + + +A PGD +G ++ + KD+RRG V
Sbjct: 287 IVGGTKDGTTVKSVISGLESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCV 337
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 53.6 bits (123), Expect = 9e-08
Identities = 40/93 (43%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Frame = +2
Query: 71 KSRRKSLPTSRKLVTI-RLPSLSYPFLAGTEITCWSRPPKCHGSRDGWLSVKKERLKVNA 247
+S +S +SR+ TI RL LS TE TC P CHGSRDG L+ +KE L
Sbjct: 152 RSPTRSPDSSRRSDTIQRLFHLSQS-PDSTETTCLRSPRTCHGSRDGLLNARKETLPERP 210
Query: 248 LLRPSTPSFRLLAPLTRLSVFPCKTYTKSAVLE 346
R TPS A LT SVF + T+S LE
Sbjct: 211 SSRLLTPSSHHNAQLTDHSVFHSRMCTRSEELE 243
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 47.2 bits (107), Expect = 8e-06
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
Frame = +1
Query: 247 LIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGTVVVFA--PANI 420
LI+ALD++ P R +P+ I G GTV VG +E G+LK G V +
Sbjct: 222 LIDALDSLPEPDRNEKDTFVMPIASKTAITGRGTVIVGTLERGVLKKGDKVEIKGDGQTL 281
Query: 421 TTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKDLRRG 534
T +++ ++++E GD+ G + V ++RG
Sbjct: 282 QTTASDIQVFGKSVKEVRAGDHCGVLCRGVKGDTVKRG 319
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 47.2 bits (107), Expect = 8e-06
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
Frame = +1
Query: 247 LIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGTVVVFA--PANI 420
LI+ALD++ P R +P+ I G GTV VG +E G+LK G V +
Sbjct: 222 LIDALDSLPEPDRNEKDTFVMPIASKTAITGRGTVIVGTLERGVLKKGDKVEIKGDGQTL 281
Query: 421 TTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKDLRRG 534
T +++ ++++E GD+ G + V ++RG
Sbjct: 282 QTTASDIQVFGKSVKEVRAGDHCGVLCRGVKGDTVKRG 319
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 38.7 bits (86), Expect = 0.003
Identities = 18/80 (22%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Frame = +1
Query: 313 LQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPAN----ITTEVKSVEMHHEALQEAVPG 480
+ D+Y + G+GT+ G + +G ++ +++ P + + +KS+ + G
Sbjct: 377 IDDIYWVDGVGTIASGTLLSGTIRLNDILLLGPTSNGDFMPIPIKSIHRKRMPVGIVKCG 436
Query: 481 DNVGFNVKNVSVKDLRRGYV 540
+ F +K + KD+R+G V
Sbjct: 437 QSASFALKKIPKKDVRKGMV 456
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 37.5 bits (83), Expect = 0.006
Identities = 18/80 (22%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Frame = +1
Query: 313 LQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPAN----ITTEVKSVEMHHEALQEAVPG 480
+ D+Y + G+GT+ G + +G ++ +++ P + + +KS+ + G
Sbjct: 378 IDDIYWVDGVGTIASGTLLSGTIRLNDILLLGPTSNGDFMPIPIKSIHRKRCLVGIVKCG 437
Query: 481 DNVGFNVKNVSVKDLRRGYV 540
+ F +K + KD+R+G V
Sbjct: 438 QSASFALKKIPKKDVRQGMV 457
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 35.5 bits (78), Expect = 0.025
Identities = 21/78 (26%), Positives = 33/78 (42%)
Frame = +1
Query: 268 ILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPANITTEVKSVEM 447
I P R + + + + I G GTV G V G+L+ T + F N VK++E
Sbjct: 191 IFEPKRDEEGEFLIAIDHCFAIKGQGTVLTGTVIRGVLRLNTEIEFPALNEKRRVKTLET 250
Query: 448 HHEALQEAVPGDNVGFNV 501
+ + + G F V
Sbjct: 251 WKQRVGQVAAGARAAFLV 268
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 35.5 bits (78), Expect = 0.025
Identities = 21/78 (26%), Positives = 33/78 (42%)
Frame = +1
Query: 268 ILPPARPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGTVVVFAPANITTEVKSVEM 447
I P R + + + + I G GTV G V G+L+ T + F N VK++E
Sbjct: 150 IFEPKRDEEGEFLIAIDHCFAIKGQGTVLTGTVIRGVLRLNTEIEFPALNEKRRVKTLET 209
Query: 448 HHEALQEAVPGDNVGFNV 501
+ + + G F V
Sbjct: 210 WKQRVGQVAAGARAAFLV 227
>U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform b protein.
Length = 1169
Score = 30.7 bits (66), Expect = 0.71
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = -1
Query: 476 GTASCRASWCISTDLTSVVMLAGAKTTTVPGFRIPVSTLPTGTVPIPPIL 327
G + CR WCI D S+++ G + P +P T P VP+PP L
Sbjct: 546 GGSVCREGWCICPD-PSMIVNRGICIQSGPKPTLPPRT-PIPQVPLPPQL 593
>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform a protein.
Length = 1876
Score = 30.7 bits (66), Expect = 0.71
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = -1
Query: 476 GTASCRASWCISTDLTSVVMLAGAKTTTVPGFRIPVSTLPTGTVPIPPIL 327
G + CR WCI D S+++ G + P +P T P VP+PP L
Sbjct: 643 GGSVCREGWCICPD-PSMIVNRGICIQSGPKPTLPPRT-PIPQVPLPPQL 690
>Z81076-4|CAB03053.1| 172|Caenorhabditis elegans Hypothetical
protein F35C5.4 protein.
Length = 172
Score = 29.5 bits (63), Expect = 1.6
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Frame = -1
Query: 512 DTFLTLKPTLSPGTASCRASWCISTDLTSVVMLAGAKTTTVPGFR--IPVSTLPTGTVPI 339
+TF + S R S +S D T V + +TVP + VST PT +
Sbjct: 36 NTFTQSSAVSESQSTSERTSRSVSPDSTPVRVTTSTLLSTVPTSQDISGVSTAPTTKATL 95
Query: 338 PPILY 324
PPI Y
Sbjct: 96 PPITY 100
>AF039711-8|ABS19466.1| 766|Caenorhabditis elegans Hypothetical
protein F49D11.10 protein.
Length = 766
Score = 29.5 bits (63), Expect = 1.6
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +1
Query: 382 KPGTVVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKN 507
KPGT+ F P ITTE K H L+ + GD +++
Sbjct: 360 KPGTIQWFDPVTITTESKM----HVTLENTIDGDMTSRGIRS 397
>U53154-3|AAC25852.1| 346|Caenorhabditis elegans Hypothetical
protein C33G8.8 protein.
Length = 346
Score = 29.1 bits (62), Expect = 2.2
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Frame = -1
Query: 464 CRASWCISTDLTSVVMLAGAKTTTV----PGFRIPVSTLPTGTVP 342
CR CI+T +T + + V PG+ +STLPT +P
Sbjct: 55 CRMEKCIATGMTMCKVQGNREKNKVRGYYPGYLPVISTLPTSVIP 99
>Z70208-11|CAA94144.1| 598|Caenorhabditis elegans Hypothetical
protein F54B11.11 protein.
Length = 598
Score = 28.3 bits (60), Expect = 3.8
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 8/80 (10%)
Frame = -1
Query: 500 TLKPTLSPGTASCRASWCISTDLTSV---VMLAGAKTTTVPGFRIPVSTLPTGTVPIPPI 330
T +P LS T+S + +T +T+ ++ A TTT P P +T T PP+
Sbjct: 471 TTQPILSTMTSSTTKTLTSTTTITTTKANILTTTATTTTPPVTSAPATTFITPVPFTPPV 530
Query: 329 -----LYTSCRGRRRALSVG 285
+Y+S G + ++G
Sbjct: 531 TNSTTIYSSNTGSTLSTTIG 550
>Z50016-15|CAA90319.1| 329|Caenorhabditis elegans Hypothetical
protein Y45F3A.1 protein.
Length = 329
Score = 28.3 bits (60), Expect = 3.8
Identities = 14/63 (22%), Positives = 28/63 (44%)
Frame = -1
Query: 464 CRASWCISTDLTSVVMLAGAKTTTVPGFRIPVSTLPTGTVPIPPILYTSCRGRRRALSVG 285
CR + +S++ +S+ L + + P TGT PIP +++ + + V
Sbjct: 213 CRKPYIVSSEASSLEDLVTSTGSLTHDHFTPEHQFKTGTAPIPTVVFDDVEEIGKVVKVH 272
Query: 284 RAG 276
+ G
Sbjct: 273 KEG 275
>AL032621-9|CAA21496.1| 329|Caenorhabditis elegans Hypothetical
protein Y45F3A.1 protein.
Length = 329
Score = 28.3 bits (60), Expect = 3.8
Identities = 14/63 (22%), Positives = 28/63 (44%)
Frame = -1
Query: 464 CRASWCISTDLTSVVMLAGAKTTTVPGFRIPVSTLPTGTVPIPPILYTSCRGRRRALSVG 285
CR + +S++ +S+ L + + P TGT PIP +++ + + V
Sbjct: 213 CRKPYIVSSEASSLEDLVTSTGSLTHDHFTPEHQFKTGTAPIPTVVFDDVEEIGKVVKVH 272
Query: 284 RAG 276
+ G
Sbjct: 273 KEG 275
>U58740-1|AAB00611.1| 1073|Caenorhabditis elegans Hypothetical
protein R09H3.1 protein.
Length = 1073
Score = 27.9 bits (59), Expect = 5.0
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +3
Query: 378 PKAWYCCRFCP 410
P W CCRFCP
Sbjct: 872 PPQWECCRFCP 882
>Z75554-1|CAA99953.3| 681|Caenorhabditis elegans Hypothetical
protein ZC455.1 protein.
Length = 681
Score = 27.5 bits (58), Expect = 6.6
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +2
Query: 170 WSRPP-KCHGSRDGWLSVKKERLKVNALLRPSTPSFRLLAPLTRLSV 307
WS P K GS+D W + R +N+ R S + R + +RLSV
Sbjct: 6 WSATPIKMVGSQDSWGTPPHYRSSLNSNYRDSPANSRNTSARSRLSV 52
>U41993-3|AAA83445.1| 384|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 39 protein.
Length = 384
Score = 27.5 bits (58), Expect = 6.6
Identities = 14/50 (28%), Positives = 29/50 (58%)
Frame = -3
Query: 348 CSNTADFVYVLQGKTESLVSGASRRKDGVEGLNKAFTFSLSFFTLNQPSL 199
CS T DF+ ++ ++ S + D V ++ ++ +++F+TL+ PSL
Sbjct: 80 CSTTNDFIINIEHSSDKKFSRLLQ--DLVSRDSRTYSKAINFYTLDDPSL 127
>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
protein 1 protein.
Length = 4568
Score = 27.1 bits (57), Expect = 8.7
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 34 STEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPISG 150
ST P+ SRF I +V + +KK+ +P + V + G
Sbjct: 1525 STLLPFESSRFATITTDVLALMKKVAASPRILDVVNMQG 1563
>U58756-9|AAC48086.1| 667|Caenorhabditis elegans Hypothetical
protein F58F9.7 protein.
Length = 667
Score = 27.1 bits (57), Expect = 8.7
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +2
Query: 107 LVTIRLPSLSYPFLAGTEITCWSRPPKC-HGSRDGWLSVKKERLKVNALL 253
++ +R P ++ L G I P C G +GW+ K R ++ALL
Sbjct: 206 VIQVRCPR-TFQTLPGITIGDMGSKPGCWQGVENGWMEFKNHRAPLSALL 254
>U56961-6|AAK39299.1| 497|Caenorhabditis elegans Hypothetical
protein T19D7.1 protein.
Length = 497
Score = 27.1 bits (57), Expect = 8.7
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -3
Query: 69 LKSRLTVWWLSGVHFVYSYN 10
+KS L ++WL V+F +SYN
Sbjct: 250 IKSLLHIFWLPHVYFPFSYN 269
>U00045-1|AAM29684.1| 1099|Caenorhabditis elegans Temporarily
assigned gene nameprotein 204, isoform c protein.
Length = 1099
Score = 27.1 bits (57), Expect = 8.7
Identities = 21/94 (22%), Positives = 40/94 (42%)
Frame = -1
Query: 368 STLPTGTVPIPPILYTSCRGRRRALSVGRAGGRMASRASIRHLPSAFPSLRSTNHPLNHG 189
+T+P T+ YTS + R+ + + +H S L+S++ LN+
Sbjct: 115 TTVPETTIHRRSEEYTSYQPRKSKEEILQVNSASRPALPRQHSASTVSPLQSSSDELNND 174
Query: 188 ILVDGSNMLSPCQPEMGTKATAAGL*PIFLM*EE 87
+D + SP E ++T + P ++ EE
Sbjct: 175 SGIDNRTVGSPSTSEFSPRSTDLFVSPKSIIDEE 208
>U00032-9|AAA50631.1| 229|Caenorhabditis elegans Hypothetical
protein F37A4.3 protein.
Length = 229
Score = 27.1 bits (57), Expect = 8.7
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -1
Query: 515 TDTFLTLKPTLSPGTASCRASWCISTD 435
T FLTL+ T T C+ SWC D
Sbjct: 42 TSLFLTLQSTGPEMTNLCKKSWCDKVD 68
>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
protein.
Length = 4568
Score = 27.1 bits (57), Expect = 8.7
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 34 STEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPISG 150
ST P+ SRF I +V + +KK+ +P + V + G
Sbjct: 1525 STLLPFESSRFATITTDVLALMKKVAASPRILDVVNMQG 1563
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.315 0.136 0.405
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,795,932
Number of Sequences: 27780
Number of extensions: 306779
Number of successful extensions: 888
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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