Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_O17
(567 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce... 84 1e-17
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac... 62 6e-11
SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce... 44 1e-05
SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog |Schi... 29 0.63
SPAC343.13 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces... 28 0.83
SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr 1||... 27 1.5
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 27 2.5
SPAC1B3.06c |||UbiE family methyltransferase |Schizosaccharomyce... 26 3.4
SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 4.4
SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|c... 26 4.4
SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|c... 25 5.9
>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 154
Score = 84.2 bits (199), Expect = 1e-17
Identities = 45/136 (33%), Positives = 75/136 (55%), Gaps = 9/136 (6%)
Frame = +2
Query: 131 YDEKVNHCSVISKPMATXXXXXXXXXXXXXXXXXXNYIRNGLKIVQKQLRLGEKGIVFFA 310
YD + I+KP+A + +R G+K V K +R GEKG+V A
Sbjct: 18 YDSYLPALMPIAKPLAPKKLNKKMMKTVKKASKQKHILR-GVKEVVKAVRKGEKGLVILA 76
Query: 311 GDISPIEIMCHLPAVCEEKDLPYCYTPSRKDIGAAMGTMR--GCIMVL-------VKEHE 463
GDISP++++ H+P +CE+ ++PY YT S++ +G A T R C+M++ + + E
Sbjct: 77 GDISPMDVISHIPVLCEDNNVPYLYTVSKELLGEASNTKRPTSCVMIVPGGKKKDMSKVE 136
Query: 464 DYKDLYDEVKSEIKLL 511
+YK+ Y+E+ E+ L
Sbjct: 137 EYKESYEEIIKEVPAL 152
>SPAC607.03c |snu13||U3 snoRNP-associated protein
Snu13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 125
Score = 62.1 bits (144), Expect = 6e-11
Identities = 32/89 (35%), Positives = 48/89 (53%)
Frame = +2
Query: 242 IRNGLKIVQKQLRLGEKGIVFFAGDISPIEIMCHLPAVCEEKDLPYCYTPSRKDIGAAMG 421
+R G K L G + A D PIEI+ HLP +CE+K++PY + PS+ +G A G
Sbjct: 32 LRKGANEATKTLNRGISEFIVMAADTEPIEILLHLPLLCEDKNVPYVFVPSKAALGRACG 91
Query: 422 TMRGCIMVLVKEHEDYKDLYDEVKSEIKL 508
R I + +E DL ++++ IKL
Sbjct: 92 VSRPVISASITTNE-ASDLLPQIQA-IKL 118
>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 44.4 bits (100), Expect = 1e-05
Identities = 19/87 (21%), Positives = 43/87 (49%)
Frame = +2
Query: 242 IRNGLKIVQKQLRLGEKGIVFFAGDISPIEIMCHLPAVCEEKDLPYCYTPSRKDIGAAMG 421
++ GL V + + +V A D+ PIE++ LPA+C++ +PY ++ +G +
Sbjct: 132 VKYGLNHVVALIEAKKAKLVLIASDVDPIELVVFLPALCKKMGVPYAIVKNKARLGTVIH 191
Query: 422 TMRGCIMVLVKEHEDYKDLYDEVKSEI 502
++ + + E+ K+ + S +
Sbjct: 192 QKTAAVLAVTEVREEDKNELASIVSAV 218
>SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 475
Score = 28.7 bits (61), Expect = 0.63
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = -1
Query: 561 IVSYILITFYAHYKGCPNSLI 499
I+S++L+ YA Y CPNSLI
Sbjct: 301 ILSHLLVFAYALYSLCPNSLI 321
>SPAC343.13 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 526
Score = 28.3 bits (60), Expect = 0.83
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +2
Query: 2 HEVNTCNLFLFGIYFII-MGKVKQEPVEQQEDQADVSIKTEPLSYDEKVN 148
H+VNT + FLF + I+ + + +E + DV++ P+ E +N
Sbjct: 166 HDVNTVSAFLFKLQSIVRFAGISEALMENGGMRCDVNVSIAPVISSENLN 215
>SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 753
Score = 27.5 bits (58), Expect = 1.5
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +2
Query: 35 GIYFIIMGKVKQEPVEQQEDQADVSIKTEPLSYDEKV 145
G F+I ++ +E+ +D A++ EP+ YD++V
Sbjct: 702 GFLFLIPQDMRDSILEETQDYAELVRAFEPMHYDDEV 738
>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1367
Score = 26.6 bits (56), Expect = 2.5
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = -3
Query: 121 FSFYRNISLIFLLF-YRFLFNFPHNY 47
F FY+N+ F+LF Y+F F NY
Sbjct: 1095 FFFYKNVIWTFILFWYQFYNEFDGNY 1120
>SPAC1B3.06c |||UbiE family methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 278
Score = 26.2 bits (55), Expect = 3.4
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +2
Query: 71 EPVEQQEDQADVSIKTEPLSYDEKVNHCS 157
EP ++ D+A+ +++ E EK+N+CS
Sbjct: 71 EPSQELLDKAEEALRKEETLKKEKINNCS 99
>SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 25.8 bits (54), Expect = 4.4
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 20 NLFLFGIYFIIMGKVKQEPVEQQEDQADVS 109
+LF F + I GK K+EP+E D + S
Sbjct: 327 SLFRFPFFRSISGKKKEEPMESGTDSLESS 356
>SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
3|||Manual
Length = 625
Score = 25.8 bits (54), Expect = 4.4
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -3
Query: 169 F*NYTTVIYFFVIGQRFSFYRNIS 98
F NYT+ F IG+ FS+ N+S
Sbjct: 239 FPNYTSAAGVFAIGEMFSYDPNVS 262
>SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 679
Score = 25.4 bits (53), Expect = 5.9
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = -3
Query: 427 HGAHCCTNIFSTGSIAV 377
HG +CC N+FS + V
Sbjct: 129 HGVYCCYNVFSQVDVRV 145
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,201,227
Number of Sequences: 5004
Number of extensions: 43968
Number of successful extensions: 98
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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