Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_O17
(567 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_1127 + 9294079-9294193,9294300-9294369,9294611-9294716,929... 80 1e-15
02_05_0610 - 30342105-30342266,30343024-30343129,30343788-303438... 79 2e-15
10_01_0125 + 1509642-1509759,1509847-1509950,1510693-1510824,151... 57 1e-08
03_02_0321 + 7443835-7443837,7443957-7444077,7444168-7444271,744... 56 1e-08
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894... 46 2e-05
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 46 2e-05
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341... 33 0.21
05_03_0115 - 8544590-8544958,8545408-8545503,8561954-8562505,857... 32 0.37
03_05_0697 + 26888791-26888861,26890468-26890579,26891561-268917... 28 4.5
>06_01_1127 +
9294079-9294193,9294300-9294369,9294611-9294716,
9295665-9295805,9296377-9296475
Length = 176
Score = 80.2 bits (189), Expect = 1e-15
Identities = 41/103 (39%), Positives = 64/103 (62%), Gaps = 11/103 (10%)
Frame = +2
Query: 242 IRNGLKIVQKQLRLGEKGIVFFAGDISPIEIMCHLPAVCEEKDLPYCYTPSRKDIGAAMG 421
++ G+K V K +R G+KG+ AG+ISPI+++ H+P +CEE ++PY Y PS++D+ A
Sbjct: 45 LKRGVKEVVKSIRRGQKGLCIIAGNISPIDVITHVPILCEEANIPYVYVPSKEDLATAGT 104
Query: 422 TMRG--CIMVLVKE-----HEDYKDL----YDEVKSEIKLLGH 517
T R C++VL K ED K+ YD+V SE+ G+
Sbjct: 105 TKRPTCCVLVLTKPAKGELEEDVKEKLKTDYDQVMSEVAEAGN 147
>02_05_0610 -
30342105-30342266,30343024-30343129,30343788-30343857,
30343978-30344092
Length = 150
Score = 79.4 bits (187), Expect = 2e-15
Identities = 35/88 (39%), Positives = 56/88 (63%)
Frame = +2
Query: 242 IRNGLKIVQKQLRLGEKGIVFFAGDISPIEIMCHLPAVCEEKDLPYCYTPSRKDIGAAMG 421
++ G+K V K +R G KG+ AG+ISPI+++ H+P +CEE ++PY Y PS++D+ A
Sbjct: 45 LKRGVKEVVKSIRRGNKGLCVIAGNISPIDVITHVPILCEEANIPYIYVPSKEDLATAGT 104
Query: 422 TMRGCIMVLVKEHEDYKDLYDEVKSEIK 505
T R VLV ++ +EVK ++K
Sbjct: 105 TKRPTCCVLVMTKPAKGEINEEVKEKLK 132
>10_01_0125 +
1509642-1509759,1509847-1509950,1510693-1510824,
1510936-1510962
Length = 126
Score = 56.8 bits (131), Expect = 1e-08
Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 2/92 (2%)
Frame = +2
Query: 242 IRNGLKIVQKQLRLGEKGIVFFAGDISPIEIMCHLPAVCEEKDLPYCYTPSRKDIGAAMG 421
++ G K L G V A D P+EI+ HLP + E+K++PY + PS++ +G A G
Sbjct: 33 LKKGANEATKTLNRGIAEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACG 92
Query: 422 TMRGCIMVLVKEHE--DYKDLYDEVKSEIKLL 511
R I V +E + +D + +K I+ L
Sbjct: 93 VTRPVIACSVTSNEASNLRDPINNLKVAIEKL 124
>03_02_0321 +
7443835-7443837,7443957-7444077,7444168-7444271,
7445056-7445187,7445285-7445311
Length = 128
Score = 56.4 bits (130), Expect = 1e-08
Identities = 26/74 (35%), Positives = 39/74 (52%)
Frame = +2
Query: 242 IRNGLKIVQKQLRLGEKGIVFFAGDISPIEIMCHLPAVCEEKDLPYCYTPSRKDIGAAMG 421
++ G K L G V A D P+EI+ HLP + E+K++PY + PS++ +G A G
Sbjct: 35 LKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACG 94
Query: 422 TMRGCIMVLVKEHE 463
R I V +E
Sbjct: 95 VTRPVIACSVTSNE 108
>09_04_0677 -
19388888-19389019,19389124-19389216,19389317-19389445,
19389559-19389728,19390280-19390481,19390576-19390623,
19390797-19390799
Length = 258
Score = 46.0 bits (104), Expect = 2e-05
Identities = 21/88 (23%), Positives = 43/88 (48%)
Frame = +2
Query: 242 IRNGLKIVQKQLRLGEKGIVFFAGDISPIEIMCHLPAVCEEKDLPYCYTPSRKDIGAAMG 421
++ GL V + + +V A D+ PIE++ LPA+C + ++PYC + +G+ +
Sbjct: 128 VKYGLNHVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKARLGSIVH 187
Query: 422 TMRGCIMVLVKEHEDYKDLYDEVKSEIK 505
++ L + K + ++ IK
Sbjct: 188 KKTASVLCLTTVKNEDKLEFSKILEAIK 215
>01_07_0018 -
40488702-40488833,40488928-40489020,40489125-40489253,
40489379-40489500,40490292-40490544,40490636-40490638
Length = 243
Score = 46.0 bits (104), Expect = 2e-05
Identities = 21/88 (23%), Positives = 43/88 (48%)
Frame = +2
Query: 242 IRNGLKIVQKQLRLGEKGIVFFAGDISPIEIMCHLPAVCEEKDLPYCYTPSRKDIGAAMG 421
++ GL V + + +V A D+ PIE++ LPA+C + ++PYC + +G+ +
Sbjct: 113 VKYGLDHVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARLGSIVH 172
Query: 422 TMRGCIMVLVKEHEDYKDLYDEVKSEIK 505
++ L + K + ++ IK
Sbjct: 173 KKTASVLCLTTVKNEDKLEFSKILEAIK 200
>08_02_0211 -
14333553-14333684,14333795-14333887,14334019-14334105,
14334220-14334389,14334985-14335186,14335604-14335606
Length = 228
Score = 32.7 bits (71), Expect = 0.21
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = +2
Query: 242 IRNGLKIVQKQLRLGEKGIVFFAGDISPIEIMCHLPAVCEEKDLPYCYTPS 394
++ GL V + + +V A D+ PIE++ LPA+C + ++ + T S
Sbjct: 112 VKYGLNHVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRKMEIVHKKTAS 162
>05_03_0115 -
8544590-8544958,8545408-8545503,8561954-8562505,
8576247-8576312,8576623-8576694,8576967-8577082,
8577743-8577838,8578498-8578765
Length = 544
Score = 31.9 bits (69), Expect = 0.37
Identities = 15/39 (38%), Positives = 26/39 (66%)
Frame = +2
Query: 401 DIGAAMGTMRGCIMVLVKEHEDYKDLYDEVKSEIKLLGH 517
++G+A+G +R LVKE+ D K +++KS+I+ L H
Sbjct: 113 ELGSAVGRLRDKEEHLVKEYRDLKLEIEQIKSDIQSLRH 151
>03_05_0697 + 26888791-26888861,26890468-26890579,26891561-26891757,
26892215-26892266,26893530-26893795,26894007-26894229,
26895154-26895327,26895408-26895485,26895566-26895817,
26896138-26898204,26899477-26901322,26901474-26901574,
26902179-26902535,26902681-26902799,26903558-26903559,
26903630-26903662,26903709-26903841,26904285-26904537,
26905688-26905912,26906401-26906466,26907373-26907471,
26908528-26908545,26908546-26908893,26909878-26910354
Length = 2522
Score = 28.3 bits (60), Expect = 4.5
Identities = 13/50 (26%), Positives = 31/50 (62%)
Frame = +2
Query: 311 GDISPIEIMCHLPAVCEEKDLPYCYTPSRKDIGAAMGTMRGCIMVLVKEH 460
G+++ +E + L VC+EKD+P+ SR G+ + + G +++ ++++
Sbjct: 1099 GEVAMVEFIKGLDPVCQEKDIPF----SRL-YGSDIAVLAGSLVIQLRDY 1143
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,038,004
Number of Sequences: 37544
Number of extensions: 244787
Number of successful extensions: 573
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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