Samia BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_O17
         (567 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF079312-1|AAC28093.1|  271|Anopheles gambiae 60S ribosomal prot...    49   9e-08
CR954256-5|CAJ14146.1|  615|Anopheles gambiae predicted protein ...    23   9.2  
AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcript...    23   9.2  

>AF079312-1|AAC28093.1|  271|Anopheles gambiae 60S ribosomal protein
           rpL7a protein.
          Length = 271

 Score = 49.2 bits (112), Expect = 9e-08
 Identities = 22/77 (28%), Positives = 41/77 (53%)
 Frame = +2

Query: 236 NYIRNGLKIVQKQLRLGEKGIVFFAGDISPIEIMCHLPAVCEEKDLPYCYTPSRKDIGAA 415
           N +R G+  V K +   +  +V  A D+ PIE++ +LPA+C +  +PYC    +  +G  
Sbjct: 140 NQLRQGINSVVKMVEQKKAQLVIIAHDVDPIELVVYLPALCRKMGVPYCIIKGKARLGTL 199

Query: 416 MGTMRGCIMVLVKEHED 466
           +   + C  V + + E+
Sbjct: 200 V-YRKTCTCVALTQFEN 215


>CR954256-5|CAJ14146.1|  615|Anopheles gambiae predicted protein
           protein.
          Length = 615

 Score = 22.6 bits (46), Expect = 9.2
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +3

Query: 129 PMTKK*ITVV*FQNRWLQKNLAKRFINSSRNQAVIK 236
           P TK+ +TV      W ++   K+F +++R + + K
Sbjct: 524 PKTKRDLTVQHRTGEWEREKAEKQFYHTARRKVLRK 559


>AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1209

 Score = 22.6 bits (46), Expect = 9.2
 Identities = 8/35 (22%), Positives = 19/35 (54%)
 Frame = -3

Query: 151 VIYFFVIGQRFSFYRNISLIFLLFYRFLFNFPHNY 47
           +I   ++GQ     RN+ + ++ + +   + PH+Y
Sbjct: 584 IIDAVIVGQAAKKQRNLDMAYIDYKKAYDSVPHSY 618


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 551,965
Number of Sequences: 2352
Number of extensions: 10468
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 53404389
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)