Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_O17
         (567 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    25   0.53 
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    23   1.6  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   6.5  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   6.5  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   6.5  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   8.6  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 25.0 bits (52), Expect = 0.53
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +2

Query: 239 YIRNGLKIVQKQLRLGEKGIVFFAGDISPIEIMCHLPAVCE 361
           ++R G K +  +LRL    I F  G   P E +C LP  CE
Sbjct: 555 WVRVG-KYLSGELRLNMSAIQFKLGHPEPPESVCSLP--CE 592


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -2

Query: 386 YSSMANLFLHTQLVSDTLFL*EKCHRQRRQSLSL 285
           Y S+   F      SDTL++ E C+R+ R   SL
Sbjct: 18  YYSLKRHFQDKHEQSDTLYVCEFCNRRYRTKNSL 51


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -3

Query: 373 QIFFFTHSW*VTHYFYRR 320
           Q+++F H   +T YF  R
Sbjct: 259 QLYYFLHKQLMTRYFLER 276


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -3

Query: 373 QIFFFTHSW*VTHYFYRR 320
           Q+++F H   +T YF  R
Sbjct: 259 QLYYFLHKQLMTRYFLER 276


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -3

Query: 412 CTNIFSTGSIAVWQIFF 362
           CT ++STG+    ++ F
Sbjct: 222 CTQVYSTGNFTCLEVVF 238


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 50  IMGKVKQEPVEQQEDQADV 106
           I+GK  Q+   QQ+ QA++
Sbjct: 252 IVGKYLQQQAGQQDQQANI 270


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,628
Number of Sequences: 438
Number of extensions: 3653
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16440594
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)