Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0004_O16
(391 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 211 3e-56
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 210 4e-56
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 210 4e-56
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 121 5e-29
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 121 5e-29
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 81 8e-17
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 42 3e-05
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 36 0.002
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 33 0.016
SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pomb... 32 0.027
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 30 0.11
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 29 0.19
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 29 0.19
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 29 0.25
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 28 0.59
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 28 0.59
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 27 1.4
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 27 1.4
SPAC3A12.07 |rpb11||DNA-directed RNA polymerase II complex subun... 26 2.4
SPAC6F6.09 |||NuA4 histone acetyltransferase complex subunit |Sc... 25 3.1
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 25 3.1
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 25 4.1
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 25 5.5
SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces po... 25 5.5
SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyc... 24 7.2
SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|c... 24 7.2
SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomy... 24 9.5
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 24 9.5
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 211 bits (515), Expect = 3e-56
Identities = 97/127 (76%), Positives = 113/127 (88%)
Frame = +3
Query: 9 WKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHA 188
WKFET KY VT+IDAPGHRDFIKNMITGTSQADCAVLI+ GTGEFEAGISK+GQTREHA
Sbjct: 78 WKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAVLIIGGGTGEFEAGISKDGQTREHA 137
Query: 189 LLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWH 368
LLA+TLGVKQLIV VNKMD+T +S++RFEEI KE S++IKK+G+NP V FVP+SG+
Sbjct: 138 LLAYTLGVKQLIVAVNKMDTT--GWSQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQ 195
Query: 369 GDNLLEP 389
GDN++EP
Sbjct: 196 GDNMIEP 202
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 210 bits (514), Expect = 4e-56
Identities = 96/127 (75%), Positives = 113/127 (88%)
Frame = +3
Query: 9 WKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHA 188
WKFET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI+ GTGEFEAGISK+GQTREHA
Sbjct: 78 WKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTGEFEAGISKDGQTREHA 137
Query: 189 LLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWH 368
LLA+TLGVKQLIV VNKMD+T +S++RFEEI KE S++IKK+G+NP V FVP+SG+
Sbjct: 138 LLAYTLGVKQLIVAVNKMDTT--GWSQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQ 195
Query: 369 GDNLLEP 389
GDN++EP
Sbjct: 196 GDNMIEP 202
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 210 bits (514), Expect = 4e-56
Identities = 96/127 (75%), Positives = 113/127 (88%)
Frame = +3
Query: 9 WKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHA 188
WKFET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI+ GTGEFEAGISK+GQTREHA
Sbjct: 78 WKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTGEFEAGISKDGQTREHA 137
Query: 189 LLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWH 368
LLA+TLGVKQLIV VNKMD+T +S++RFEEI KE S++IKK+G+NP V FVP+SG+
Sbjct: 138 LLAYTLGVKQLIVAVNKMDTT--GWSQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQ 195
Query: 369 GDNLLEP 389
GDN++EP
Sbjct: 196 GDNMIEP 202
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 121 bits (291), Expect = 5e-29
Identities = 63/125 (50%), Positives = 80/125 (64%), Gaps = 1/125 (0%)
Frame = +3
Query: 15 FETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALL 194
FE+ K I DAPGHRDFI MI G S AD AVL+V + FE G +NGQTREHA L
Sbjct: 250 FESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYL 309
Query: 195 AFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSY-IKKIGYNPAAVAFVPISGWHG 371
LG+ +++V VNK+D +SE RF+EIK VS + IK +G+ + V FVPIS G
Sbjct: 310 LRALGISEIVVSVNKLDLMS--WSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISG 367
Query: 372 DNLLE 386
NL++
Sbjct: 368 TNLIQ 372
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 121 bits (291), Expect = 5e-29
Identities = 55/124 (44%), Positives = 84/124 (67%), Gaps = 2/124 (1%)
Frame = +3
Query: 15 FETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALL 194
FET +++DAPGH+ ++ NMI G SQAD VL+++A GEFEAG + GQTREHA+L
Sbjct: 311 FETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVL 370
Query: 195 AFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKI-GYNPAA-VAFVPISGWH 368
A T G+ L+V +NKMD +SE R++E ++S +++++ GYN V ++P+S +
Sbjct: 371 ARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYT 430
Query: 369 GDNL 380
G N+
Sbjct: 431 GQNV 434
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 80.6 bits (190), Expect = 8e-17
Identities = 41/99 (41%), Positives = 61/99 (61%)
Frame = +3
Query: 12 KFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHAL 191
++ET + +D PGH D+IKNMITG + D A+++V+A G+ QTREH L
Sbjct: 110 EYETANRHYAHVDCPGHADYIKNMITGAATMDGAIIVVSATDGQMP-------QTREHLL 162
Query: 192 LAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSY 308
LA +GVKQ++V +NK+D EP E E+++ +S Y
Sbjct: 163 LARQVGVKQIVVYINKVDMVEPDMIELVEMEMRELLSEY 201
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 41.9 bits (94), Expect = 3e-05
Identities = 23/93 (24%), Positives = 42/93 (45%)
Frame = +3
Query: 33 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 212
+V+ +D PGH + M+ G + D A+L++A QT EH + +
Sbjct: 109 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMQL 162
Query: 213 KQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYI 311
K +I+ NK+D +E ++ I K + +
Sbjct: 163 KHIIILQNKVDLIRESAAEEHYQSILKFIKGTV 195
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 35.9 bits (79), Expect = 0.002
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = +3
Query: 15 FETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 140
F+ G ++T +D PGH F G + AD VL+VA G
Sbjct: 215 FDKGSKFITFLDTPGHMAFEAMRKRGANIADIVVLVVAGDDG 256
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 33.1 bits (72), Expect = 0.016
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = +3
Query: 30 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREH 185
Y + IID PGH DF + D AVL++ A +G I+ + Q R +
Sbjct: 145 YNINIIDTPGHIDFTIEVERALRVLDGAVLVLCAVSGVQSQTITVDRQMRRY 196
>SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 695
Score = 32.3 bits (70), Expect = 0.027
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = +3
Query: 204 LGVKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNL 380
L + + + KMD E + E++F + + S++K+ F+PISG G NL
Sbjct: 407 LSISSYMFAITKMDEIE--WDENKFINLVNSIQSFLKESCGIIEKSKFIPISGLKGTNL 463
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 30.3 bits (65), Expect = 0.11
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 30 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 140
Y + +ID+PGH DF + + + D A ++V A G
Sbjct: 94 YLINLIDSPGHVDFSSEVSSASRLCDGAFVLVDAVEG 130
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 29.5 bits (63), Expect = 0.19
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 42 IIDAPGHRDFIKNMITGTSQADCAVLIV 125
IID PGH F GTS + A+L++
Sbjct: 553 IIDTPGHESFTNLRSRGTSLCNIAILVI 580
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 29.5 bits (63), Expect = 0.19
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +3
Query: 30 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 140
Y + +ID PGH DF ++ + + +L+V A G
Sbjct: 124 YLLNLIDTPGHVDFRAEVMHSLAACEGCILLVDASQG 160
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 29.1 bits (62), Expect = 0.25
Identities = 23/70 (32%), Positives = 34/70 (48%)
Frame = +3
Query: 36 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 215
+ +ID PGH DF + + D AV I+ + AG+ QT+ A G+
Sbjct: 95 INLIDTPGHADFTFEVERSVAVLDGAVAII-----DGSAGV--EAQTKVVWKQATKRGIP 147
Query: 216 QLIVGVNKMD 245
++I VNKMD
Sbjct: 148 KVIF-VNKMD 156
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 27.9 bits (59), Expect = 0.59
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 30 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 125
+ V +ID+PGH DF + D A+++V
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 27.9 bits (59), Expect = 0.59
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 30 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 125
+ V +ID+PGH DF + D A+++V
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 26.6 bits (56), Expect = 1.4
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 45 IDAPGHRDFIKNMITGTSQADCAVLIV 125
ID PGH DF+ + + +D VL+V
Sbjct: 214 IDTPGHVDFVDEVAAPMAISDGVVLVV 240
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 26.6 bits (56), Expect = 1.4
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 247 PLSHHTVSLDLRKSRRKSLPTSRKLVTIRLPSLS 348
P S +++ +K +LPTS K++T PS+S
Sbjct: 402 PTSFPSLTSSTKKIPSTTLPTSSKMITTTTPSVS 435
>SPAC3A12.07 |rpb11||DNA-directed RNA polymerase II complex subunit
Rpb11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 123
Score = 25.8 bits (54), Expect = 2.4
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = -3
Query: 116 HGAVSLRRSSDHVLDEISVSRSVDDGDIVFAGFELP 9
+ AV DH L + ++ + D ++FAG+++P
Sbjct: 28 NAAVVTLEKEDHTLANMLANQLLSDERVLFAGYKVP 63
>SPAC6F6.09 |||NuA4 histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 138
Score = 25.4 bits (53), Expect = 3.1
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +3
Query: 249 TEPPYSESRFEEIKKEVSSYIKK 317
+EPP + S +E+ KKE+ I+K
Sbjct: 9 SEPPVNVSYYEQCKKELHEMIEK 31
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting protein
3 homolog Bud6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1385
Score = 25.4 bits (53), Expect = 3.1
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3
Query: 146 EFTSTSGDNKHGAVSLRRSSDHVLDE 69
+F S+ + K+G + SSD VLDE
Sbjct: 1234 DFVSSKRNGKNGGSFIEESSDTVLDE 1259
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 25.0 bits (52), Expect = 4.1
Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = -1
Query: 304 EETSFLISSNRDSLYGGSVESILFTPTISCLTPSVKASRACSRVCPFFEIPAS-NSPVPA 128
E + + ISSN S S FT + S TP++ S + V + +S +SP+ +
Sbjct: 757 ETSGYTISSN-SSQNSASEPQTAFTSSSSSATPTITQSSISTSVSSQSSMNSSYSSPISS 815
Query: 127 ATISTAQS 104
+++++ S
Sbjct: 816 NSVTSSTS 823
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 24.6 bits (51), Expect = 5.5
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +3
Query: 36 VTIIDAPGHRDFIKN 80
+T+ID PG DFI N
Sbjct: 89 LTVIDTPGFGDFINN 103
>SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 334
Score = 24.6 bits (51), Expect = 5.5
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = -3
Query: 119 KHGAVSLRRSSDHVLDEISVSRSVDDGDIVFAGFEL 12
K G V + + V+DE ++ ++D+G + AG ++
Sbjct: 236 KRGIVIVNTARGAVMDEAALVEALDEGIVYSAGLDV 271
>SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 381
Score = 24.2 bits (50), Expect = 7.2
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = +2
Query: 56 WTQRFHQEHDHWN 94
W Q F Q+H +WN
Sbjct: 258 WQQSFLQDHGYWN 270
>SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 504
Score = 24.2 bits (50), Expect = 7.2
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +1
Query: 250 LSHHTVSLDLRKSRRKSLPTSRKLVTIRLPSLSYPFLAGTEITCWS 387
LS+ T L + KSL ++ +T R+ +L+ P++ +CW+
Sbjct: 414 LSNDTNKLAVYMGFYKSLQSAGAAITYRMDTLNIPYM-NYFASCWA 458
>SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 754
Score = 23.8 bits (49), Expect = 9.5
Identities = 9/41 (21%), Positives = 18/41 (43%)
Frame = +3
Query: 243 DSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPISGW 365
DS P + + + + YI+++G P + I+ W
Sbjct: 513 DSFNTPLVMQHIDNLVTQANIYIREVGQQPCSRLLGQIASW 553
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1428
Score = 23.8 bits (49), Expect = 9.5
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -3
Query: 257 WLSGVHFVYSYNQLLDSECE 198
W++G H Y N L+S CE
Sbjct: 1214 WINGKHGSYCENNELNSGCE 1233
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,696,437
Number of Sequences: 5004
Number of extensions: 32915
Number of successful extensions: 171
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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