Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_O15
         (529 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15 |Sc...    26   3.0  
SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein Sad1|S...    26   3.0  
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    25   5.3  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    25   5.3  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    25   7.0  
SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr 3|...    25   9.2  

>SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +3

Query: 90  VVTPAYVLNFIKNRNLYELYPNVW-IALQILLIILVTVASGERCFSNLFAIDN 245
           ++   Y+L  I N   YE   N+W I  + L+  +++VA  E+  + +  + N
Sbjct: 322 MIVEYYILQCIPNFRSYEEVQNIWTIICEKLVETILSVAFTEQSTTTIIKLKN 374


>SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein
           Sad1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -1

Query: 115 FKT*AGVTTFLLGQKYFRLTSSSHNTQPSISELETLVP 2
           F T   +T    GQ+++  + SS N+QPS S +  + P
Sbjct: 179 FSTLLIITLLHKGQEFYSRSFSSDNSQPSNSPVPNIPP 216


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 110 NISRGNHILIRPKIFQAYKFITQH 39
           NIS  NH L+ PK   A K I ++
Sbjct: 881 NISTSNHFLLPPKAISASKAINRN 904


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
            Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 8/25 (32%), Positives = 18/25 (72%)
 Frame = +1

Query: 70   IFGLIRMWLPLLMF*ILSKIATCMN 144
            +FG + +W+P L++  +S +A C++
Sbjct: 1497 LFGTMTVWIPHLIYFWISTLAMCIS 1521


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 483 SAGFTTTSALGDISTAPPNDNS 418
           S+GF TTS L   S + P+ NS
Sbjct: 653 SSGFNTTSGLPTSSASTPSSNS 674



 Score = 25.0 bits (52), Expect = 7.0
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -2

Query: 483 SAGFTTTSALGDISTAPPNDNSVLY 409
           S+GF TTS L   S + P  NS  Y
Sbjct: 715 SSGFNTTSGLPTSSVSTPLSNSSAY 739


>SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 834

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 380 LFYYIHCIFSYKTELSLGGAVE 445
           LF ++H  F+ +  +SLGG VE
Sbjct: 157 LFGFMHSFFTGENGVSLGGGVE 178


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,887,390
Number of Sequences: 5004
Number of extensions: 32547
Number of successful extensions: 92
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)