Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0004_O15
         (529 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0452 + 23774378-23775054,23775228-23775411,23775911-237759...    50   2e-06
10_08_0015 + 14116129-14116691,14116810-14117128,14117588-141186...    44   1e-04
02_02_0202 - 7742137-7744636,7744760-7744973,7745755-7745797           41   5e-04
12_02_0798 + 23270223-23270693,23270760-23271069,23271103-23272730     38   0.004
04_02_0027 + 8715882-8715928,8716570-8716934,8717147-8717506,871...    32   0.33 
02_04_0490 - 23411742-23412944,23413071-23413595,23413666-234137...    31   0.76 
09_04_0271 + 16271569-16271767,16272072-16272206,16272286-162725...    28   5.3  
03_03_0263 + 15984244-15985321,15985411-15986144                       27   7.1  

>11_06_0452 +
           23774378-23775054,23775228-23775411,23775911-23775996,
           23776116-23777010
          Length = 613

 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 33/80 (41%), Positives = 45/80 (56%)
 Frame = +3

Query: 9   RVSNSDIDGCVLCDELVSLKYFWPNKNVVTPAYVLNFIKNRNLYELYPNVWIALQILLII 188
           R   SDID   L  EL  L+ F P +N+  P  +L F+K    ++ +PN  IA +ILL I
Sbjct: 491 RDEKSDIDANELYTELRFLQDFIPKENM-GPLEILKFLKR---HDCFPNASIAYRILLTI 546

Query: 189 LVTVASGERCFSNLFAIDNF 248
            VTVAS ER  S L  + ++
Sbjct: 547 PVTVASAERSISKLKLLKSY 566


>10_08_0015 +
           14116129-14116691,14116810-14117128,14117588-14118664,
           14118754-14119056
          Length = 753

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 28/75 (37%), Positives = 42/75 (56%)
 Frame = +3

Query: 24  DIDGCVLCDELVSLKYFWPNKNVVTPAYVLNFIKNRNLYELYPNVWIALQILLIILVTVA 203
           DID   L  EL+ L+ F   + +  P  +L F+K    ++ +PN  IA +ILL I VT+A
Sbjct: 531 DIDATELHVELIFLQSFISQEKL-GPVEILKFLKR---HDCFPNATIAYRILLTIPVTIA 586

Query: 204 SGERCFSNLFAIDNF 248
           S E  FS L  + ++
Sbjct: 587 SAEWSFSKLKLLKSY 601


>02_02_0202 - 7742137-7744636,7744760-7744973,7745755-7745797
          Length = 918

 Score = 41.1 bits (92), Expect = 5e-04
 Identities = 29/78 (37%), Positives = 42/78 (53%)
 Frame = +3

Query: 15   SNSDIDGCVLCDELVSLKYFWPNKNVVTPAYVLNFIKNRNLYELYPNVWIALQILLIILV 194
            ++SD++      EL  L+   P+     P  +L FI      + YPNV +A +ILL + V
Sbjct: 799  NSSDVELNDFFSELKVLQATLPDALKSAPE-ILEFI---TAADCYPNVLVAYRILLTVPV 854

Query: 195  TVASGERCFSNLFAIDNF 248
            TVAS ER FS L  + N+
Sbjct: 855  TVASTERSFSKLKLLKNY 872


>12_02_0798 + 23270223-23270693,23270760-23271069,23271103-23272730
          Length = 802

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 25/77 (32%), Positives = 42/77 (54%)
 Frame = +3

Query: 18  NSDIDGCVLCDELVSLKYFWPNKNVVTPAYVLNFIKNRNLYELYPNVWIALQILLIILVT 197
           +SD+D   L  EL  +++  P++ + +   +  F+      + YPN+ IA +IL  + VT
Sbjct: 686 SSDVDINDLISELGVIQFTLPDRPM-SAMEIFEFVTEA---DCYPNISIAYRILFTMPVT 741

Query: 198 VASGERCFSNLFAIDNF 248
           VAS E  FS L  + N+
Sbjct: 742 VASAEITFSKLKLLKNY 758


>04_02_0027 +
           8715882-8715928,8716570-8716934,8717147-8717506,
           8718063-8718576,8718657-8718684
          Length = 437

 Score = 31.9 bits (69), Expect = 0.33
 Identities = 15/46 (32%), Positives = 27/46 (58%)
 Frame = +3

Query: 87  NVVTPAYVLNFIKNRNLYELYPNVWIALQILLIILVTVASGERCFS 224
           N+ T A +   ++    +  YP V+  L+++L++ V  A+ ERCFS
Sbjct: 329 NIQTIAELSQIMEETRKHLCYPLVYQLLKLVLVLPVATATVERCFS 374


>02_04_0490 -
           23411742-23412944,23413071-23413595,23413666-23413747,
           23413841-23414050,23414371-23414523,23415335-23415447,
           23415476-23415622
          Length = 810

 Score = 30.7 bits (66), Expect = 0.76
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +3

Query: 87  NVVTPAYVLNFIKNRNLYELYPNVWIALQILLIILVTVASGERCFS 224
           N+ T A +   +     +  YP V+  L+++L++ V  A+ ERCFS
Sbjct: 711 NIQTIAELSQIMVETRKHLCYPLVYQLLKLVLVLPVATATVERCFS 756


>09_04_0271 +
           16271569-16271767,16272072-16272206,16272286-16272548,
           16272865-16272996,16273083-16273199,16273752-16273904,
           16274417-16274529,16274600-16274753,16274900-16275118
          Length = 494

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +3

Query: 39  VLCDELVSLKYFWPNKNVVTPAYVLNFIKNRNLYEL 146
           V+C++    +Y   + N+VTP ++L   K + L  L
Sbjct: 224 VVCEDASVKRYVGHSDNIVTPLWILKTAKEKGLQRL 259


>03_03_0263 + 15984244-15985321,15985411-15986144
          Length = 603

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +2

Query: 386 YYIHCIFSYKTELSLGGAVEMSPRALVVVKPAL 484
           +Y  C+ S   +   G A  M  R +++VKP L
Sbjct: 416 FYRSCVISGTVDFIFGDAAAMFQRCIILVKPPL 448


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,452,903
Number of Sequences: 37544
Number of extensions: 180252
Number of successful extensions: 361
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 361
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)